miRNA display CGI


Results 1 - 20 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 5' -57.1 NC_001875.2 + 128623 1.12 0.001372
Target:  5'- gCCAACGCGCCCACGCCAUCCAACCGCc -3'
miRNA:   3'- -GGUUGCGCGGGUGCGGUAGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 65523 0.85 0.095975
Target:  5'- aCGGCGgcCGCCCACGCCAUcaacucgCCGGCCGCg -3'
miRNA:   3'- gGUUGC--GCGGGUGCGGUA-------GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 102543 0.82 0.138275
Target:  5'- aCAACGCGCacgaCACGCCAcaCGACCGCg -3'
miRNA:   3'- gGUUGCGCGg---GUGCGGUagGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 5291 0.82 0.149259
Target:  5'- gCCGACGUGCCCGCGCCcgaCGACCa- -3'
miRNA:   3'- -GGUUGCGCGGGUGCGGuagGUUGGcg -5'
7020 5' -57.1 NC_001875.2 + 98366 0.81 0.17981
Target:  5'- cCCAGCGCGCggCGCGCCAcuuucgaccacuggCCGGCCGCg -3'
miRNA:   3'- -GGUUGCGCGg-GUGCGGUa-------------GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 309 0.8 0.191799
Target:  5'- aCgGGCGCGCuUUGCGCCGcuUCCAGCCGCu -3'
miRNA:   3'- -GgUUGCGCG-GGUGCGGU--AGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 36829 0.79 0.211611
Target:  5'- gCAguuGCGCGCCCGCGCCAcuaauguauaagUUguACCGCa -3'
miRNA:   3'- gGU---UGCGCGGGUGCGGU------------AGguUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 41807 0.79 0.225961
Target:  5'- gCCGgcacGCGCGCCgGCGCCGcggccaguugcgcgUCCAguuGCCGCg -3'
miRNA:   3'- -GGU----UGCGCGGgUGCGGU--------------AGGU---UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 128755 0.78 0.238827
Target:  5'- cCCGGCGCGUgCACGCCGUgggcgaccCCGgcgcGCCGCu -3'
miRNA:   3'- -GGUUGCGCGgGUGCGGUA--------GGU----UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 49863 0.78 0.250508
Target:  5'- gCCGGCGCGCCUugccgGCGCCAaCCAaguggucgucgaGCUGCg -3'
miRNA:   3'- -GGUUGCGCGGG-----UGCGGUaGGU------------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 37586 0.78 0.250508
Target:  5'- gCCGGCGCGa--GCGCCGcggCCGGCCGCa -3'
miRNA:   3'- -GGUUGCGCgggUGCGGUa--GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 7585 0.78 0.250508
Target:  5'- aCCAACGCGCCgCcuguCGUCAUUguGCCGCc -3'
miRNA:   3'- -GGUUGCGCGG-Gu---GCGGUAGguUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 21845 0.78 0.256523
Target:  5'- --cGCGCGUCaACGCCA-CCGACCGCg -3'
miRNA:   3'- gguUGCGCGGgUGCGGUaGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 97958 0.78 0.268908
Target:  5'- aCGACGCgGCCaccgaaACGCCGUucugCCGGCCGCg -3'
miRNA:   3'- gGUUGCG-CGGg-----UGCGGUA----GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 20939 0.77 0.275279
Target:  5'- gCCAGCucaaaCGCCCGCgGCCGUCCAG-CGCa -3'
miRNA:   3'- -GGUUGc----GCGGGUG-CGGUAGGUUgGCG- -5'
7020 5' -57.1 NC_001875.2 + 3840 0.77 0.279811
Target:  5'- gCCGGCGCGgCCGCaGCC-UCCAacaugugacgauccGCCGCa -3'
miRNA:   3'- -GGUUGCGCgGGUG-CGGuAGGU--------------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 66055 0.77 0.285724
Target:  5'- aCC-GCGCGCCgACGCCGcgcgcgugcucgcCCAGCCGCc -3'
miRNA:   3'- -GGuUGCGCGGgUGCGGUa------------GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 20664 0.77 0.287716
Target:  5'- cCCAGCGCGCCCAagaaaauCGCUAagCAgcGCCGUg -3'
miRNA:   3'- -GGUUGCGCGGGU-------GCGGUagGU--UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 120766 0.77 0.288383
Target:  5'- uCCAggGCGCGCgCCACGCCAaaCuGCUGCa -3'
miRNA:   3'- -GGU--UGCGCG-GGUGCGGUagGuUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 81345 0.77 0.288383
Target:  5'- gCGGCGCGCuggugCCGCGCgCAcgcgCCGGCCGCg -3'
miRNA:   3'- gGUUGCGCG-----GGUGCG-GUa---GGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.