miRNA display CGI


Results 1 - 20 of 531 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 5' -57.1 NC_001875.2 + 47117 0.66 0.847229
Target:  5'- gCgGGCGCaaCCGCGaCCccUUCAACCGCg -3'
miRNA:   3'- -GgUUGCGcgGGUGC-GGu-AGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 6194 0.66 0.850378
Target:  5'- gCCcGCGCGCCguuucaaagCGCGCaauugCGUCCGucggcgacacgcccaGCCGCu -3'
miRNA:   3'- -GGuUGCGCGG---------GUGCG-----GUAGGU---------------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 96019 0.66 0.847229
Target:  5'- aCCAGa-CGCCCAUGCUGUgCGugGCgCGCg -3'
miRNA:   3'- -GGUUgcGCGGGUGCGGUAgGU--UG-GCG- -5'
7020 5' -57.1 NC_001875.2 + 9018 0.66 0.839223
Target:  5'- aCCAAauccgaGUGUgCACGUUggUCGACCGCg -3'
miRNA:   3'- -GGUUg-----CGCGgGUGCGGuaGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 39189 0.66 0.847229
Target:  5'- gCGugGCGUUUacgguGCGCCGcuaCAACCGCc -3'
miRNA:   3'- gGUugCGCGGG-----UGCGGUag-GUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 45457 0.66 0.847229
Target:  5'- cUCGGCGC-UCgGCGCCcg-CAGCCGCg -3'
miRNA:   3'- -GGUUGCGcGGgUGCGGuagGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 17094 0.66 0.839223
Target:  5'- cCgGGCaaGCCgCGCGCCAcuggCGGCCGCa -3'
miRNA:   3'- -GgUUGcgCGG-GUGCGGUag--GUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 95433 0.66 0.847229
Target:  5'- gCCucGCgGCGCCCGUGUCGUCCA-CCa- -3'
miRNA:   3'- -GGu-UG-CGCGGGUGCGGUAGGUuGGcg -5'
7020 5' -57.1 NC_001875.2 + 42441 0.66 0.847229
Target:  5'- gCAAa-CGCCUGCGUCAg-CGGCCGCu -3'
miRNA:   3'- gGUUgcGCGGGUGCGGUagGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 90784 0.66 0.836785
Target:  5'- aCGGCGUGCacgaCCACGCCGcucguaaaaacgccUCCAcgGCCacGCg -3'
miRNA:   3'- gGUUGCGCG----GGUGCGGU--------------AGGU--UGG--CG- -5'
7020 5' -57.1 NC_001875.2 + 110825 0.66 0.847229
Target:  5'- -gGACGCGCUggUGCGCCG-CgGACUGUa -3'
miRNA:   3'- ggUUGCGCGG--GUGCGGUaGgUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 23083 0.66 0.839223
Target:  5'- aCCGGCaa-CCCGCGCCgcGUgCAGCUGCc -3'
miRNA:   3'- -GGUUGcgcGGGUGCGG--UAgGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 18680 0.66 0.846437
Target:  5'- gCCAuaucaaacggcgcGCGCGCCgGCGUgcaCAUUaacguGCCGCa -3'
miRNA:   3'- -GGU-------------UGCGCGGgUGCG---GUAGgu---UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 48022 0.66 0.839223
Target:  5'- -gGugGCgGCCCACGUgG-CC-GCCGCc -3'
miRNA:   3'- ggUugCG-CGGGUGCGgUaGGuUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 48827 0.66 0.847229
Target:  5'- uCC-GCGCGCUacgGCGCCGcUUCAAgcCCGCc -3'
miRNA:   3'- -GGuUGCGCGGg--UGCGGU-AGGUU--GGCG- -5'
7020 5' -57.1 NC_001875.2 + 69233 0.66 0.847229
Target:  5'- gCGACGCGCgCUGUGCCGacuugcCCGACgGCa -3'
miRNA:   3'- gGUUGCGCG-GGUGCGGUa-----GGUUGgCG- -5'
7020 5' -57.1 NC_001875.2 + 4570 0.66 0.847229
Target:  5'- gCAACGCgagcaGCCgCAUGCCcgaCAugCGCa -3'
miRNA:   3'- gGUUGCG-----CGG-GUGCGGuagGUugGCG- -5'
7020 5' -57.1 NC_001875.2 + 64007 0.66 0.847229
Target:  5'- uUCAGCaCG-CCGCGCCAcuuggCCGaaaACCGCu -3'
miRNA:   3'- -GGUUGcGCgGGUGCGGUa----GGU---UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 107473 0.66 0.847229
Target:  5'- -aAACGCGCCCaACGaCCAcgacggguaUCUGgagcugaacGCCGCg -3'
miRNA:   3'- ggUUGCGCGGG-UGC-GGU---------AGGU---------UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 130680 0.66 0.877273
Target:  5'- gCGACGaCGCCuCugGCUgGUCCGcuugcauguacGCCGUg -3'
miRNA:   3'- gGUUGC-GCGG-GugCGG-UAGGU-----------UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.