miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7022 3' -58.1 NC_001875.2 + 129426 1.12 0.00092
Target:  5'- aUGAGCACGGUGCGCGACAGUCAGGCCa -3'
miRNA:   3'- -ACUCGUGCCACGCGCUGUCAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 19946 0.76 0.25948
Target:  5'- gGAGCGgccgGCGCGACGGUCcGGCCg -3'
miRNA:   3'- aCUCGUgccaCGCGCUGUCAGuCCGG- -5'
7022 3' -58.1 NC_001875.2 + 97991 0.76 0.265701
Target:  5'- cGcGCACGGUGCGCGACGuGUUguuugacgAGGCg -3'
miRNA:   3'- aCuCGUGCCACGCGCUGU-CAG--------UCCGg -5'
7022 3' -58.1 NC_001875.2 + 91874 0.76 0.272043
Target:  5'- aGGGCGCcugcuGGUGCgGCGGCgGGUCGGGCa -3'
miRNA:   3'- aCUCGUG-----CCACG-CGCUG-UCAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 27470 0.75 0.298624
Target:  5'- gGAGUggGGUGCGCGACGcuUUAGGCg -3'
miRNA:   3'- aCUCGugCCACGCGCUGUc-AGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 72571 0.75 0.298624
Target:  5'- cGGGCGCGG-GCGCuGCGGgugCGGGCg -3'
miRNA:   3'- aCUCGUGCCaCGCGcUGUCa--GUCCGg -5'
7022 3' -58.1 NC_001875.2 + 24022 0.74 0.349881
Target:  5'- cGGGCGCGG-GCuCGGCGGUCGcguGGCUg -3'
miRNA:   3'- aCUCGUGCCaCGcGCUGUCAGU---CCGG- -5'
7022 3' -58.1 NC_001875.2 + 42978 0.74 0.357695
Target:  5'- -cAGCACGGUGUGCGuCuugauGUUGGGCUg -3'
miRNA:   3'- acUCGUGCCACGCGCuGu----CAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 41608 0.74 0.357695
Target:  5'- cGGGCGCGG-GCGCGGgcauCGGuaUCGGGUCg -3'
miRNA:   3'- aCUCGUGCCaCGCGCU----GUC--AGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 70039 0.74 0.373688
Target:  5'- uUGAuuGUGCGGUcGCuGCGACGGaCGGGCCu -3'
miRNA:   3'- -ACU--CGUGCCA-CG-CGCUGUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 19345 0.73 0.407097
Target:  5'- gUGGGCGUGGUGCGCGGagcGUU-GGCCg -3'
miRNA:   3'- -ACUCGUGCCACGCGCUgu-CAGuCCGG- -5'
7022 3' -58.1 NC_001875.2 + 19478 0.72 0.424489
Target:  5'- cGGGCGCuGGUGC-UGGCGGcUCGGGCa -3'
miRNA:   3'- aCUCGUG-CCACGcGCUGUC-AGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 90727 0.72 0.442317
Target:  5'- -aAGCGCGacacgacGUGCGACGGUguGGCCa -3'
miRNA:   3'- acUCGUGCca-----CGCGCUGUCAguCCGG- -5'
7022 3' -58.1 NC_001875.2 + 88497 0.72 0.442317
Target:  5'- gGAGCGCaaguacguGGUGCGCGGCGGcaacCAcGCCg -3'
miRNA:   3'- aCUCGUG--------CCACGCGCUGUCa---GUcCGG- -5'
7022 3' -58.1 NC_001875.2 + 59903 0.72 0.451388
Target:  5'- cUGcGCGCGGaGCGCG-CGGUCAaGGCg -3'
miRNA:   3'- -ACuCGUGCCaCGCGCuGUCAGU-CCGg -5'
7022 3' -58.1 NC_001875.2 + 103328 0.72 0.460561
Target:  5'- cGGGCgACGcGUGCGCGACGGcUAG-CCa -3'
miRNA:   3'- aCUCG-UGC-CACGCGCUGUCaGUCcGG- -5'
7022 3' -58.1 NC_001875.2 + 127245 0.72 0.46983
Target:  5'- uUGAGCGCGGccucuucGUGCG-CAuGUCGGGCa -3'
miRNA:   3'- -ACUCGUGCCa------CGCGCuGU-CAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 26162 0.71 0.479195
Target:  5'- cGGGCGCGGUGUGUGGguGgccGGCa -3'
miRNA:   3'- aCUCGUGCCACGCGCUguCaguCCGg -5'
7022 3' -58.1 NC_001875.2 + 126556 0.71 0.502031
Target:  5'- cGGGCGCGGgcacgucggccaucGCGUGGCAGUUuuGGCa -3'
miRNA:   3'- aCUCGUGCCa-------------CGCGCUGUCAGu-CCGg -5'
7022 3' -58.1 NC_001875.2 + 81720 0.71 0.507815
Target:  5'- aGAGCGCuacGUGCGCGucaacgaccuGCAGUggauuccgcggCGGGCCg -3'
miRNA:   3'- aCUCGUGc--CACGCGC----------UGUCA-----------GUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.