miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7022 3' -58.1 NC_001875.2 + 117338 0.67 0.718658
Target:  5'- -cGGCGCGGcGCggGCGAacCGG-CGGGCCg -3'
miRNA:   3'- acUCGUGCCaCG--CGCU--GUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 95301 0.69 0.627823
Target:  5'- cGGGgACGGUGCGCGcCAGc---GCCg -3'
miRNA:   3'- aCUCgUGCCACGCGCuGUCagucCGG- -5'
7022 3' -58.1 NC_001875.2 + 79764 0.68 0.656334
Target:  5'- cGAGCAU-GUGCGCaaacaccgcuucgGGCAgguagggcgggucGUCGGGCCg -3'
miRNA:   3'- aCUCGUGcCACGCG-------------CUGU-------------CAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 42751 0.68 0.668518
Target:  5'- cGcGCAUGGUGaGCGGCGcGcUCGGGUCg -3'
miRNA:   3'- aCuCGUGCCACgCGCUGU-C-AGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 32772 0.68 0.668518
Target:  5'- cGAGCGCGuccucGCGCGGCGuGggCGGGCg -3'
miRNA:   3'- aCUCGUGCca---CGCGCUGU-Ca-GUCCGg -5'
7022 3' -58.1 NC_001875.2 + 50335 0.68 0.678639
Target:  5'- cGAGC-UGGUgGUGuCGGCGucguuggcGUCGGGCCg -3'
miRNA:   3'- aCUCGuGCCA-CGC-GCUGU--------CAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 12380 0.67 0.708741
Target:  5'- aGGGUgccACGGUGcCGCucgucGUCGGGCCg -3'
miRNA:   3'- aCUCG---UGCCAC-GCGcugu-CAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 39665 0.67 0.708741
Target:  5'- uUGGGCcgGCGGcGCGCGGCGG-CGaGCUg -3'
miRNA:   3'- -ACUCG--UGCCaCGCGCUGUCaGUcCGG- -5'
7022 3' -58.1 NC_001875.2 + 113564 0.67 0.717669
Target:  5'- -cGGCGCGGUcGCGC-ACGGcgcgccaUUGGGCCa -3'
miRNA:   3'- acUCGUGCCA-CGCGcUGUC-------AGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 29289 0.69 0.627823
Target:  5'- gGGGCGCGGUcGUGUGGCGuGUCGuGCg -3'
miRNA:   3'- aCUCGUGCCA-CGCGCUGU-CAGUcCGg -5'
7022 3' -58.1 NC_001875.2 + 97893 0.69 0.597307
Target:  5'- cGGGCACGuUGCG-GGC-GUCGGcGCCg -3'
miRNA:   3'- aCUCGUGCcACGCgCUGuCAGUC-CGG- -5'
7022 3' -58.1 NC_001875.2 + 35649 0.69 0.597307
Target:  5'- cGcAGCGCaaGUGCGCGGCcaUCAGGCa -3'
miRNA:   3'- aC-UCGUGc-CACGCGCUGucAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 97991 0.76 0.265701
Target:  5'- cGcGCACGGUGCGCGACGuGUUguuugacgAGGCg -3'
miRNA:   3'- aCuCGUGCCACGCGCUGU-CAG--------UCCGg -5'
7022 3' -58.1 NC_001875.2 + 27470 0.75 0.298624
Target:  5'- gGAGUggGGUGCGCGACGcuUUAGGCg -3'
miRNA:   3'- aCUCGugCCACGCGCUGUc-AGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 72571 0.75 0.298624
Target:  5'- cGGGCGCGG-GCGCuGCGGgugCGGGCg -3'
miRNA:   3'- aCUCGUGCCaCGCGcUGUCa--GUCCGg -5'
7022 3' -58.1 NC_001875.2 + 19345 0.73 0.407097
Target:  5'- gUGGGCGUGGUGCGCGGagcGUU-GGCCg -3'
miRNA:   3'- -ACUCGUGCCACGCGCUgu-CAGuCCGG- -5'
7022 3' -58.1 NC_001875.2 + 90727 0.72 0.442317
Target:  5'- -aAGCGCGacacgacGUGCGACGGUguGGCCa -3'
miRNA:   3'- acUCGUGCca-----CGCGCUGUCAguCCGG- -5'
7022 3' -58.1 NC_001875.2 + 103328 0.72 0.460561
Target:  5'- cGGGCgACGcGUGCGCGACGGcUAG-CCa -3'
miRNA:   3'- aCUCG-UGC-CACGCGCUGUCaGUCcGG- -5'
7022 3' -58.1 NC_001875.2 + 98276 0.71 0.527291
Target:  5'- cGGGCAUGGUGCcccGCGGCGaccgcacUguGGCCa -3'
miRNA:   3'- aCUCGUGCCACG---CGCUGUc------AguCCGG- -5'
7022 3' -58.1 NC_001875.2 + 36804 0.69 0.597307
Target:  5'- --uGCACGGUGCGCGuuacgcgccgcgGCAGUUGcGcGCCc -3'
miRNA:   3'- acuCGUGCCACGCGC------------UGUCAGU-C-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.