miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7022 5' -57.9 NC_001875.2 + 23011 0.66 0.783595
Target:  5'- uUGGGCGCgcaccguguucAGCgUGUUGGACaguUCCAAa-- -3'
miRNA:   3'- -ACCCGCG-----------UCG-ACAGCCUG---AGGUUgua -5'
7022 5' -57.9 NC_001875.2 + 122131 0.66 0.768494
Target:  5'- cGGGCGCGGCgcgGcCGGcgcgcacgacggcgaGCcCCAACGg -3'
miRNA:   3'- aCCCGCGUCGa--CaGCC---------------UGaGGUUGUa -5'
7022 5' -57.9 NC_001875.2 + 87841 0.66 0.755018
Target:  5'- cUGGGCaCGGCgcccGUCGGGCugUCCGugGc -3'
miRNA:   3'- -ACCCGcGUCGa---CAGCCUG--AGGUugUa -5'
7022 5' -57.9 NC_001875.2 + 57700 0.66 0.755018
Target:  5'- cGGGCGCcGCgcccUCGaACUCCAGCu- -3'
miRNA:   3'- aCCCGCGuCGac--AGCcUGAGGUUGua -5'
7022 5' -57.9 NC_001875.2 + 111594 0.66 0.755018
Target:  5'- -uGGUGgGGCUGUUGGGCcauUCCGGCc- -3'
miRNA:   3'- acCCGCgUCGACAGCCUG---AGGUUGua -5'
7022 5' -57.9 NC_001875.2 + 124412 0.66 0.745257
Target:  5'- cGGcGCGCAGUUgcccucgucGUUGGGC-CCAAUAUg -3'
miRNA:   3'- aCC-CGCGUCGA---------CAGCCUGaGGUUGUA- -5'
7022 5' -57.9 NC_001875.2 + 53061 0.66 0.745257
Target:  5'- cGGGCGUAccGCUGUCuGGCaagUCGACGUu -3'
miRNA:   3'- aCCCGCGU--CGACAGcCUGa--GGUUGUA- -5'
7022 5' -57.9 NC_001875.2 + 117338 0.67 0.705295
Target:  5'- -cGGCGCGGCg--CGGGCgaaCCGGCGg -3'
miRNA:   3'- acCCGCGUCGacaGCCUGa--GGUUGUa -5'
7022 5' -57.9 NC_001875.2 + 120646 0.67 0.684895
Target:  5'- -cGGCGCGGC-GUCGuGCUCCAcaACGg -3'
miRNA:   3'- acCCGCGUCGaCAGCcUGAGGU--UGUa -5'
7022 5' -57.9 NC_001875.2 + 40576 0.68 0.674623
Target:  5'- -aGGUGUugaccaAGCUGUCGGACUCguACu- -3'
miRNA:   3'- acCCGCG------UCGACAGCCUGAGguUGua -5'
7022 5' -57.9 NC_001875.2 + 127839 0.68 0.664316
Target:  5'- cGGGCGCGGC-GUUGGACgacgagaaggaCCuGCAUu -3'
miRNA:   3'- aCCCGCGUCGaCAGCCUGa----------GGuUGUA- -5'
7022 5' -57.9 NC_001875.2 + 122773 0.68 0.664316
Target:  5'- -aGGCGCAGUUGgCGGAaaCCGGCGc -3'
miRNA:   3'- acCCGCGUCGACaGCCUgaGGUUGUa -5'
7022 5' -57.9 NC_001875.2 + 57921 0.68 0.642595
Target:  5'- gGGGUucaaccuGCAGgUGUUGGACcCCGACGc -3'
miRNA:   3'- aCCCG-------CGUCgACAGCCUGaGGUUGUa -5'
7022 5' -57.9 NC_001875.2 + 22582 0.68 0.63327
Target:  5'- cGGGCGCGGCgcGUUGGcCggCCGGCu- -3'
miRNA:   3'- aCCCGCGUCGa-CAGCCuGa-GGUUGua -5'
7022 5' -57.9 NC_001875.2 + 26162 0.68 0.622908
Target:  5'- cGGGCGCGGUgUGUgGGuggCCGGCAa -3'
miRNA:   3'- aCCCGCGUCG-ACAgCCugaGGUUGUa -5'
7022 5' -57.9 NC_001875.2 + 113353 0.69 0.602213
Target:  5'- cGGGCGCGGCUG-CGucGCUgCGGCGc -3'
miRNA:   3'- aCCCGCGUCGACaGCc-UGAgGUUGUa -5'
7022 5' -57.9 NC_001875.2 + 2682 0.69 0.602213
Target:  5'- gGGGCaacuGCGGCgccUCGGcagACUCCAGCAUc -3'
miRNA:   3'- aCCCG----CGUCGac-AGCC---UGAGGUUGUA- -5'
7022 5' -57.9 NC_001875.2 + 2367 0.69 0.591896
Target:  5'- --uGUGCGGCaUGUUGGAgUCCGACAg -3'
miRNA:   3'- accCGCGUCG-ACAGCCUgAGGUUGUa -5'
7022 5' -57.9 NC_001875.2 + 19478 0.7 0.540901
Target:  5'- cGGGCGCugguGCUGgCGG-CUCgGGCAg -3'
miRNA:   3'- aCCCGCGu---CGACaGCCuGAGgUUGUa -5'
7022 5' -57.9 NC_001875.2 + 15263 0.7 0.540901
Target:  5'- gUGGGCGgAGUcuUCGaGCUCCAGCAg -3'
miRNA:   3'- -ACCCGCgUCGacAGCcUGAGGUUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.