miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7024 3' -54.4 NC_001875.2 + 16380 0.66 0.93976
Target:  5'- --cCGCGCCCGcuAgcucaacgcGGUAGGugcgguguucGUCGCCg -3'
miRNA:   3'- caaGCGUGGGCuuU---------UCGUCC----------CAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 92413 0.66 0.936837
Target:  5'- uUUUGCACUCGAAAcagacauuugcaaaaAGCu-GGUCGCa -3'
miRNA:   3'- cAAGCGUGGGCUUU---------------UCGucCCAGCGg -5'
7024 3' -54.4 NC_001875.2 + 72936 0.66 0.934333
Target:  5'- cUUCGCugUCGAucuGCAgcguuucGGG-CGCCa -3'
miRNA:   3'- cAAGCGugGGCUuuuCGU-------CCCaGCGG- -5'
7024 3' -54.4 NC_001875.2 + 68550 0.66 0.929669
Target:  5'- gGUUUGcCGCCgCGGc-GGCGGcGGUCGCg -3'
miRNA:   3'- -CAAGC-GUGG-GCUuuUCGUC-CCAGCGg -5'
7024 3' -54.4 NC_001875.2 + 50007 0.66 0.929669
Target:  5'- -gUCGCGgUUGggGcGCGcGuGGUCGCCg -3'
miRNA:   3'- caAGCGUgGGCuuUuCGU-C-CCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 128731 0.66 0.929669
Target:  5'- ---aGCACCUGGAccGCuAGaccacuacauGGUCGCCg -3'
miRNA:   3'- caagCGUGGGCUUuuCG-UC----------CCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 84209 0.66 0.929669
Target:  5'- ---aGCugCCGGu-AGUAGGGcCGCg -3'
miRNA:   3'- caagCGugGGCUuuUCGUCCCaGCGg -5'
7024 3' -54.4 NC_001875.2 + 15090 0.66 0.924253
Target:  5'- ---aGCGCCUGGuuGAGGCGGGGUUuuucuaCCa -3'
miRNA:   3'- caagCGUGGGCU--UUUCGUCCCAGc-----GG- -5'
7024 3' -54.4 NC_001875.2 + 66962 0.66 0.924253
Target:  5'- uGUUCGCGCUCa-----CGGGGUUGCUg -3'
miRNA:   3'- -CAAGCGUGGGcuuuucGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 41130 0.66 0.924253
Target:  5'- -gUCGCGCuuGAccGGCGGccgCGCCg -3'
miRNA:   3'- caAGCGUGggCUuuUCGUCccaGCGG- -5'
7024 3' -54.4 NC_001875.2 + 92691 0.66 0.920883
Target:  5'- -cUCGCgGCCCcAAAauggccaucaucgccGGuCAGGGUCGUCg -3'
miRNA:   3'- caAGCG-UGGGcUUU---------------UC-GUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 43319 0.66 0.918587
Target:  5'- --gCGCGCgCGGGucGGCGuGGUUGCCg -3'
miRNA:   3'- caaGCGUGgGCUUu-UCGUcCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 67723 0.67 0.915069
Target:  5'- gGUUCGUugCCGAGcugaaaaagucgacgGAGUuu-GUCGCCa -3'
miRNA:   3'- -CAAGCGugGGCUU---------------UUCGuccCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 9347 0.67 0.912674
Target:  5'- --aUGuCGCCCGAAAccAGCuuugcGGGUUGCUu -3'
miRNA:   3'- caaGC-GUGGGCUUU--UCGu----CCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 11564 0.67 0.912069
Target:  5'- --aCGCGCCgccgaagCGggGAGCGGuGUgCGCCu -3'
miRNA:   3'- caaGCGUGG-------GCuuUUCGUCcCA-GCGG- -5'
7024 3' -54.4 NC_001875.2 + 110721 0.67 0.906515
Target:  5'- uUUCGCAaCgGAGAAcGCGGGG-CGCg -3'
miRNA:   3'- cAAGCGUgGgCUUUU-CGUCCCaGCGg -5'
7024 3' -54.4 NC_001875.2 + 128691 0.67 0.906515
Target:  5'- -cUCGcCGCCCGAcGccgcguccgcgcAGCGGGcuUCGCCg -3'
miRNA:   3'- caAGC-GUGGGCUuU------------UCGUCCc-AGCGG- -5'
7024 3' -54.4 NC_001875.2 + 11930 0.67 0.900113
Target:  5'- uGUUCuGCACCC-AGGGGUuGaGGUCGCg -3'
miRNA:   3'- -CAAG-CGUGGGcUUUUCGuC-CCAGCGg -5'
7024 3' -54.4 NC_001875.2 + 44335 0.67 0.892111
Target:  5'- uGUUCGaggacgccuuuaGCUCGAucGGGCAGcGGUCGCg -3'
miRNA:   3'- -CAAGCg-----------UGGGCUu-UUCGUC-CCAGCGg -5'
7024 3' -54.4 NC_001875.2 + 75200 0.67 0.886587
Target:  5'- gGUUCcaaCACUggaCGGAAAGUAcauuGGGUCGCCu -3'
miRNA:   3'- -CAAGc--GUGG---GCUUUUCGU----CCCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.