miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7024 5' -53.2 NC_001875.2 + 3035 0.66 0.955607
Target:  5'- --uGUACACGCCGUUgGGcAGCGc-- -3'
miRNA:   3'- gauCGUGUGCGGCAAgCUcUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 9639 0.66 0.959077
Target:  5'- --uGCGCGCGCCGUgcguguuUCGcGAGCu--- -3'
miRNA:   3'- gauCGUGUGCGGCA-------AGCuCUCGcaag -5'
7024 5' -53.2 NC_001875.2 + 12855 0.67 0.932718
Target:  5'- gCUAGCACGCaGCCGUggUUGGucGUGUUg -3'
miRNA:   3'- -GAUCGUGUG-CGGCA--AGCUcuCGCAAg -5'
7024 5' -53.2 NC_001875.2 + 14395 0.7 0.800352
Target:  5'- -aAGCACugGUCGgg-GGGAGCGUa- -3'
miRNA:   3'- gaUCGUGugCGGCaagCUCUCGCAag -5'
7024 5' -53.2 NC_001875.2 + 14532 0.68 0.899611
Target:  5'- uUGGCggGCACGCCGcuUguguugaaaaauuaaUCGGGAGaCGUUCu -3'
miRNA:   3'- gAUCG--UGUGCGGC--A---------------AGCUCUC-GCAAG- -5'
7024 5' -53.2 NC_001875.2 + 17068 0.91 0.070342
Target:  5'- aUAGCACGCGCU-UUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 17133 1.03 0.011584
Target:  5'- aUAGCACACGCCGUUCGAGAGCGUUg -3'
miRNA:   3'- gAUCGUGUGCGGCAAGCUCUCGCAAg -5'
7024 5' -53.2 NC_001875.2 + 17199 0.87 0.115008
Target:  5'- aUAGCACACGCCGUUCGcGAGCGc-- -3'
miRNA:   3'- gAUCGUGUGCGGCAAGCuCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 19875 0.66 0.963058
Target:  5'- -cGGCGCggGCGCCGUUUGcGAaacGCGUg- -3'
miRNA:   3'- gaUCGUG--UGCGGCAAGCuCU---CGCAag -5'
7024 5' -53.2 NC_001875.2 + 26785 0.74 0.617823
Target:  5'- -gAGCgACGCGCCG-UCGAGGGUGg-- -3'
miRNA:   3'- gaUCG-UGUGCGGCaAGCUCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 31981 0.66 0.963058
Target:  5'- gUGGCGCGCguacgGCCgGUUUGuGAGCGg-- -3'
miRNA:   3'- gAUCGUGUG-----CGG-CAAGCuCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 33045 0.69 0.868187
Target:  5'- -gGGCGcCGCGCCGcgCGGauAGCGUUCc -3'
miRNA:   3'- gaUCGU-GUGCGGCaaGCUc-UCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 35138 0.67 0.935795
Target:  5'- -gGGCGCAaguuuagcgaaaaGCCGUacUCGcuAGCGUUCa -3'
miRNA:   3'- gaUCGUGUg------------CGGCA--AGCucUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 42493 0.66 0.951523
Target:  5'- --cGCGCACGCCG-UCGuccGCGUg- -3'
miRNA:   3'- gauCGUGUGCGGCaAGCucuCGCAag -5'
7024 5' -53.2 NC_001875.2 + 42642 0.66 0.955209
Target:  5'- uCUGGCACGCccaGCCGguccgcgUCGAGgcugauuugcgccAGCGUg- -3'
miRNA:   3'- -GAUCGUGUG---CGGCa------AGCUC-------------UCGCAag -5'
7024 5' -53.2 NC_001875.2 + 44665 0.69 0.844239
Target:  5'- uCUGGCGCACGCUG-UCGuuGGUGa-- -3'
miRNA:   3'- -GAUCGUGUGCGGCaAGCucUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 51207 0.71 0.742481
Target:  5'- uCUGGCGC-CGCCcgUCGAGcgcGCGUUCc -3'
miRNA:   3'- -GAUCGUGuGCGGcaAGCUCu--CGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 53915 0.7 0.82724
Target:  5'- --uGgGCGCGCCGUUgCGGGcGCGUUg -3'
miRNA:   3'- gauCgUGUGCGGCAA-GCUCuCGCAAg -5'
7024 5' -53.2 NC_001875.2 + 55321 0.71 0.759346
Target:  5'- gUGGCGCgcgacggugaugacGCGCCGcUUCGGGGGCGc-- -3'
miRNA:   3'- gAUCGUG--------------UGCGGC-AAGCUCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 62754 0.66 0.955607
Target:  5'- gUGGCcCGCGCCGUUgaacgcgcaGGGGuGCGUUUg -3'
miRNA:   3'- gAUCGuGUGCGGCAAg--------CUCU-CGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.