miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7024 5' -53.2 NC_001875.2 + 14395 0.7 0.800352
Target:  5'- -aAGCACugGUCGgg-GGGAGCGUa- -3'
miRNA:   3'- gaUCGUGugCGGCaagCUCUCGCAag -5'
7024 5' -53.2 NC_001875.2 + 101201 0.93 0.046345
Target:  5'- aUAGCACGCGCUuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 101333 0.93 0.046345
Target:  5'- aUAGCACGCGCUuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 101399 0.93 0.046345
Target:  5'- aUAGCACGCGCUuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 101465 0.93 0.046345
Target:  5'- aUAGCACGCGCUuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 129985 0.74 0.586306
Target:  5'- aUAGCACGCGCCuUUCaaaAGCGUUCa -3'
miRNA:   3'- gAUCGUGUGCGGcAAGcucUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 26785 0.74 0.617823
Target:  5'- -gAGCgACGCGCCG-UCGAGGGUGg-- -3'
miRNA:   3'- gaUCG-UGUGCGGCaAGCUCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 95131 0.74 0.628362
Target:  5'- aUAGCcCACGCCGUUgcuguugaCGuuGGCGUUCa -3'
miRNA:   3'- gAUCGuGUGCGGCAA--------GCucUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 55321 0.71 0.759346
Target:  5'- gUGGCGCgcgacggugaugacGCGCCGcUUCGGGGGCGc-- -3'
miRNA:   3'- gAUCGUG--------------UGCGGC-AAGCUCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 130309 0.96 0.033084
Target:  5'- aUAGCACGCGCCGUUCGAGAGCGc-- -3'
miRNA:   3'- gAUCGUGUGCGGCAAGCUCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 130375 0.97 0.028732
Target:  5'- gUAGCACGCGCCuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 130537 0.97 0.027932
Target:  5'- aUAGCACGCGCCuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 130470 1.1 0.003914
Target:  5'- gCUAGCACGCGCCGUUCGAGAGCGUUCg -3'
miRNA:   3'- -GAUCGUGUGCGGCAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 130051 1.08 0.005516
Target:  5'- aUAGCACGCGCCGUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGCAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 130177 1.08 0.005516
Target:  5'- aUAGCACGCGCCGUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGCAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 130243 1.08 0.005516
Target:  5'- aUAGCACGCGCCGUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGCAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 101135 0.97 0.027932
Target:  5'- aUAGCACGCGCCuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 101267 0.97 0.027932
Target:  5'- aUAGCACGCGCCuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 101531 0.97 0.027932
Target:  5'- aUAGCACGCGCCuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 101597 0.97 0.027932
Target:  5'- aUAGCACGCGCCuUUCGAGAGCGUUCg -3'
miRNA:   3'- gAUCGUGUGCGGcAAGCUCUCGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.