miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7025 3' -56 NC_001875.2 + 130135 1.08 0.002886
Target:  5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCAGCGA- -5'
7025 3' -56 NC_001875.2 + 130201 1.08 0.002886
Target:  5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCAGCGA- -5'
7025 3' -56 NC_001875.2 + 130267 1.08 0.002886
Target:  5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCAGCGA- -5'
7025 3' -56 NC_001875.2 + 129943 1.01 0.009078
Target:  5'- gCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 130495 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 130399 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 130075 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 101621 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 101555 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 101489 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 101423 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 101357 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 101291 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 101225 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 101159 1.01 0.009334
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5'
7025 3' -56 NC_001875.2 + 130333 0.97 0.015412
Target:  5'- cCGCACCCaAAAGGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGcUUUUCGUCCCAGCAGCGA- -5'
7025 3' -56 NC_001875.2 + 17091 0.96 0.01771
Target:  5'- uCGCACCCGAAAAGCAcGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGCUUUUCGUcCCAGCAGCGA- -5'
7025 3' -56 NC_001875.2 + 130011 0.95 0.02092
Target:  5'- -aCACCCGAAAAGCAGGGUCGUUGCUg -3'
miRNA:   3'- gcGUGGGCUUUUCGUCCCAGCAGCGA- -5'
7025 3' -56 NC_001875.2 + 130561 0.92 0.036357
Target:  5'- uCGCACCCGAAAAGCAGGGUCGcCGa- -3'
miRNA:   3'- -GCGUGGGCUUUUCGUCCCAGCaGCga -5'
7025 3' -56 NC_001875.2 + 17158 0.88 0.07
Target:  5'- gGCACCCGAAAAGCAcGGUCGcCGCUg -3'
miRNA:   3'- gCGUGGGCUUUUCGUcCCAGCaGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.