Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7025 | 3' | -56 | NC_001875.2 | + | 3426 | 0.68 | 0.766932 |
Target: 5'- gGguCCC-AAGAGCGcuGGUCGUCGCa -3' miRNA: 3'- gCguGGGcUUUUCGUc-CCAGCAGCGa -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 130075 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 130399 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 130495 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 130333 | 0.97 | 0.015412 |
Target: 5'- cCGCACCCaAAAGGCAGGGUCGUCGCUg -3' miRNA: 3'- -GCGUGGGcUUUUCGUCCCAGCAGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 130011 | 0.95 | 0.02092 |
Target: 5'- -aCACCCGAAAAGCAGGGUCGUUGCUg -3' miRNA: 3'- gcGUGGGCUUUUCGUCCCAGCAGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 130561 | 0.92 | 0.036357 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGa- -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCga -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 101093 | 0.79 | 0.231617 |
Target: 5'- gGCGCCUauAAAAGCGGGGUCGcCGCUg -3' miRNA: 3'- gCGUGGGc-UUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 42969 | 0.7 | 0.697886 |
Target: 5'- gCGCGCCaacaaugcuuUGAAAGGCGGcGGcCGUUGCg -3' miRNA: 3'- -GCGUGG----------GCUUUUCGUC-CCaGCAGCGa -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 101621 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 101555 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 101489 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 130201 | 1.08 | 0.002886 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCAGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 130267 | 1.08 | 0.002886 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGUCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCAGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 129943 | 1.01 | 0.009078 |
Target: 5'- gCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 101159 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 101225 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 101291 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 101357 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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7025 | 3' | -56 | NC_001875.2 | + | 101423 | 1.01 | 0.009334 |
Target: 5'- uCGCACCCGAAAAGCAGGGUCGcCGCUg -3' miRNA: 3'- -GCGUGGGCUUUUCGUCCCAGCaGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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