miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7025 5' -47 NC_001875.2 + 3912 0.67 0.999381
Target:  5'- gCUAAGA--AGCuGCGCGCUGagcuuugCGAGAa -3'
miRNA:   3'- -GAUUUUuaUCG-UGCGCGGCaa-----GCUCU- -5'
7025 5' -47 NC_001875.2 + 6454 0.7 0.993308
Target:  5'- ----uAGUAGCGCGCGgUGUUCGucAGGu -3'
miRNA:   3'- gauuuUUAUCGUGCGCgGCAAGC--UCU- -5'
7025 5' -47 NC_001875.2 + 9628 0.68 0.997016
Target:  5'- gCUAAGcugcguGCGCGCGCCGUgcguguuucgCGAGc -3'
miRNA:   3'- -GAUUUuuau--CGUGCGCGGCAa---------GCUCu -5'
7025 5' -47 NC_001875.2 + 9734 0.68 0.996857
Target:  5'- -gAAGcGUGGCACGUguugagcguccaccGCCGUUcCGAGGc -3'
miRNA:   3'- gaUUUuUAUCGUGCG--------------CGGCAA-GCUCU- -5'
7025 5' -47 NC_001875.2 + 11210 0.68 0.998271
Target:  5'- --------cGC-CGCGCCGgaCGAGAa -3'
miRNA:   3'- gauuuuuauCGuGCGCGGCaaGCUCU- -5'
7025 5' -47 NC_001875.2 + 17063 0.86 0.384634
Target:  5'- -cAAAAAUAGCACGCGCU-UUCGAGAg -3'
miRNA:   3'- gaUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 17128 0.92 0.189511
Target:  5'- -cAAAAAUAGCACaCGCCGUUCGAGAg -3'
miRNA:   3'- gaUUUUUAUCGUGcGCGGCAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 17194 0.82 0.597478
Target:  5'- -cAAAAAUAGCACaCGCCGUUCGcGAg -3'
miRNA:   3'- gaUUUUUAUCGUGcGCGGCAAGCuCU- -5'
7025 5' -47 NC_001875.2 + 19708 0.68 0.998271
Target:  5'- --cGAGGU-GUACGCGCUGUgggcCGAGGc -3'
miRNA:   3'- gauUUUUAuCGUGCGCGGCAa---GCUCU- -5'
7025 5' -47 NC_001875.2 + 19875 0.66 0.999812
Target:  5'- -------cGGCGCggGCGCCGUUUGcGAa -3'
miRNA:   3'- gauuuuuaUCGUG--CGCGGCAAGCuCU- -5'
7025 5' -47 NC_001875.2 + 26785 0.73 0.959098
Target:  5'- -------gAGCgACGCGCCGU-CGAGGg -3'
miRNA:   3'- gauuuuuaUCG-UGCGCGGCAaGCUCU- -5'
7025 5' -47 NC_001875.2 + 28920 0.66 0.99969
Target:  5'- -cAAGAccGUGGC-CGCGUauUUCGAGAg -3'
miRNA:   3'- gaUUUU--UAUCGuGCGCGgcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 31734 0.66 0.99969
Target:  5'- -cGAAGuUGGCcCGCGgCGUUUGAGc -3'
miRNA:   3'- gaUUUUuAUCGuGCGCgGCAAGCUCu -5'
7025 5' -47 NC_001875.2 + 34987 0.71 0.984765
Target:  5'- gCUAGAAGUGGCGCccaugacgcucGCcgaguucgaucgGCUGUUCGAGGu -3'
miRNA:   3'- -GAUUUUUAUCGUG-----------CG------------CGGCAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 36648 0.75 0.906531
Target:  5'- uUGAAGAUGGC-CGCGUCGUgcgcgcugagcUCGGGGc -3'
miRNA:   3'- gAUUUUUAUCGuGCGCGGCA-----------AGCUCU- -5'
7025 5' -47 NC_001875.2 + 42643 0.67 0.998832
Target:  5'- ------cUGGCACGCccaGCCGguccgcgUCGAGGc -3'
miRNA:   3'- gauuuuuAUCGUGCG---CGGCa------AGCUCU- -5'
7025 5' -47 NC_001875.2 + 46045 0.7 0.989715
Target:  5'- --------cGCGCGCGCCGUUCuuauGGAc -3'
miRNA:   3'- gauuuuuauCGUGCGCGGCAAGc---UCU- -5'
7025 5' -47 NC_001875.2 + 48529 0.66 0.999812
Target:  5'- -------cGGCGCGCGCCccgCGGGu -3'
miRNA:   3'- gauuuuuaUCGUGCGCGGcaaGCUCu -5'
7025 5' -47 NC_001875.2 + 50976 0.68 0.998575
Target:  5'- ------uUGGCGCGCGCCGagUCGc-- -3'
miRNA:   3'- gauuuuuAUCGUGCGCGGCa-AGCucu -5'
7025 5' -47 NC_001875.2 + 52445 0.69 0.995085
Target:  5'- -aGGAAAUGGUGUGCGCCGa-CGAGGa -3'
miRNA:   3'- gaUUUUUAUCGUGCGCGGCaaGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.