miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7025 5' -47 NC_001875.2 + 26785 0.73 0.959098
Target:  5'- -------gAGCgACGCGCCGU-CGAGGg -3'
miRNA:   3'- gauuuuuaUCG-UGCGCGGCAaGCUCU- -5'
7025 5' -47 NC_001875.2 + 101392 0.95 0.132743
Target:  5'- gCUAAAAAUAGCACGCGCUuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 101458 0.95 0.132743
Target:  5'- gCUAAAAAUAGCACGCGCUuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 130471 0.95 0.136486
Target:  5'- ------cUAGCACGCGCCGUUCGAGAg -3'
miRNA:   3'- gauuuuuAUCGUGCGCGGCAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 129978 0.81 0.608449
Target:  5'- gCUAAAAAUAGCACGCGCCuUUCa--- -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGcucu -5'
7025 5' -47 NC_001875.2 + 130111 0.81 0.608449
Target:  5'- ------cUAGCACaCGCCGUUCGAGAg -3'
miRNA:   3'- gauuuuuAUCGUGcGCGGCAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 36648 0.75 0.906531
Target:  5'- uUGAAGAUGGC-CGCGUCGUgcgcgcugagcUCGGGGc -3'
miRNA:   3'- gAUUUUUAUCGuGCGCGGCA-----------AGCUCU- -5'
7025 5' -47 NC_001875.2 + 118622 0.74 0.941345
Target:  5'- uCUGAAAGauuuUAGcCACGUGCCGgcCGAGGc -3'
miRNA:   3'- -GAUUUUU----AUC-GUGCGCGGCaaGCUCU- -5'
7025 5' -47 NC_001875.2 + 61591 0.73 0.955058
Target:  5'- gUGGAGGUAGCgcccgaucaccGCGCGCUGgcuuggCGAGAa -3'
miRNA:   3'- gAUUUUUAUCG-----------UGCGCGGCaa----GCUCU- -5'
7025 5' -47 NC_001875.2 + 101326 0.95 0.132743
Target:  5'- gCUAAAAAUAGCACGCGCUuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 101194 0.95 0.132743
Target:  5'- gCUAAAAAUAGCACGCGCUuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 130530 0.99 0.079763
Target:  5'- gCUAAAAAUAGCACGCGCCuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 130170 1.11 0.014995
Target:  5'- gCUAAAAAUAGCACGCGCCGUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGCAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 130236 1.11 0.014995
Target:  5'- gCUAAAAAUAGCACGCGCCGUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGCAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 130302 1.11 0.014995
Target:  5'- gCUAAAAAUAGCACGCGCCGUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGCAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 101128 0.99 0.079763
Target:  5'- gCUAAAAAUAGCACGCGCCuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 101260 0.99 0.079763
Target:  5'- gCUAAAAAUAGCACGCGCCuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 101524 0.99 0.079763
Target:  5'- gCUAAAAAUAGCACGCGCCuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 101590 0.99 0.079763
Target:  5'- gCUAAAAAUAGCACGCGCCuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 130368 0.99 0.079763
Target:  5'- gCUAAAAGUAGCACGCGCCuUUCGAGAg -3'
miRNA:   3'- -GAUUUUUAUCGUGCGCGGcAAGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.