miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7026 3' -56.6 NC_001875.2 + 103346 0.66 0.86981
Target:  5'- aCGCugUCGggcGGGGGCAccuGGUUGUCGUUg -3'
miRNA:   3'- -GCGugGGU---UUUCCGUc--CCAGCAGCGA- -5'
7026 3' -56.6 NC_001875.2 + 29279 0.66 0.869065
Target:  5'- cCGCGCCgGcgGGGCGcGGUCGUguggcgugucgugCGCg -3'
miRNA:   3'- -GCGUGGgUuuUCCGUcCCAGCA-------------GCGa -5'
7026 3' -56.6 NC_001875.2 + 15090 0.66 0.865308
Target:  5'- aGCGCCUGGuuGAGGCGGGGUuuuucuaccaguaugUGUuucCGCUu -3'
miRNA:   3'- gCGUGGGUU--UUCCGUCCCA---------------GCA---GCGA- -5'
7026 3' -56.6 NC_001875.2 + 55772 0.66 0.849752
Target:  5'- uCGCGCCUAAAcacGGGCAGcacaaacgucgagucGGU-GUCGCc -3'
miRNA:   3'- -GCGUGGGUUU---UCCGUC---------------CCAgCAGCGa -5'
7026 3' -56.6 NC_001875.2 + 33130 0.66 0.846543
Target:  5'- uGCACacaCAAAAauggcGGCAGGGcaacagcacggCGUCGCg -3'
miRNA:   3'- gCGUGg--GUUUU-----CCGUCCCa----------GCAGCGa -5'
7026 3' -56.6 NC_001875.2 + 42714 0.66 0.838383
Target:  5'- uCGUACgCA--AGGCGcacccGGUCGUCGCg -3'
miRNA:   3'- -GCGUGgGUuuUCCGUc----CCAGCAGCGa -5'
7026 3' -56.6 NC_001875.2 + 102568 0.67 0.8215
Target:  5'- cCGCGCCCcGccGGCGcGGUCGgcggccgCGCa -3'
miRNA:   3'- -GCGUGGGuUuuCCGUcCCAGCa------GCGa -5'
7026 3' -56.6 NC_001875.2 + 110164 0.67 0.803919
Target:  5'- uCGCGCUCGucGGGCGGcGUCGcacugCGCUc -3'
miRNA:   3'- -GCGUGGGUuuUCCGUCcCAGCa----GCGA- -5'
7026 3' -56.6 NC_001875.2 + 44344 0.68 0.757359
Target:  5'- aCGCcuuuaGCUCGAucGGGCAGcGGUCG-CGCUu -3'
miRNA:   3'- -GCG-----UGGGUUu-UCCGUC-CCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 94322 0.68 0.728001
Target:  5'- gCGCGUCC---AGGCAGGGcgCGUCGUc -3'
miRNA:   3'- -GCGUGGGuuuUCCGUCCCa-GCAGCGa -5'
7026 3' -56.6 NC_001875.2 + 29343 0.69 0.707993
Target:  5'- gGCGCCCAccgcuuguGGUccguuuccGGGUCGUCGCc -3'
miRNA:   3'- gCGUGGGUuuu-----CCGu-------CCCAGCAGCGa -5'
7026 3' -56.6 NC_001875.2 + 42969 0.69 0.707993
Target:  5'- gCGCGCCaacaaugcuuUGAAAGGCGGcGGcCGUUGCg -3'
miRNA:   3'- -GCGUGG----------GUUUUCCGUC-CCaGCAGCGa -5'
7026 3' -56.6 NC_001875.2 + 11935 0.69 0.697886
Target:  5'- uGCACCC-AGGGGUuGaGGUCG-CGCa -3'
miRNA:   3'- gCGUGGGuUUUCCGuC-CCAGCaGCGa -5'
7026 3' -56.6 NC_001875.2 + 80096 0.7 0.643604
Target:  5'- uGCACuCCAucGcguuuuuauaguugAAGGCccauGGGUCGUCGCa -3'
miRNA:   3'- gCGUG-GGU--U--------------UUCCGu---CCCAGCAGCGa -5'
7026 3' -56.6 NC_001875.2 + 29859 0.7 0.636388
Target:  5'- gGCACCUggGAaaaCGGGGUCGUCGa- -3'
miRNA:   3'- gCGUGGGuuUUcc-GUCCCAGCAGCga -5'
7026 3' -56.6 NC_001875.2 + 243 0.7 0.636388
Target:  5'- gCGCACguuuuUCAGcgcGGCGGGGUCGUUGUa -3'
miRNA:   3'- -GCGUG-----GGUUuu-CCGUCCCAGCAGCGa -5'
7026 3' -56.6 NC_001875.2 + 11830 0.7 0.61577
Target:  5'- uCGCGCCgGu--GGCGGGGUCGgUGUa -3'
miRNA:   3'- -GCGUGGgUuuuCCGUCCCAGCaGCGa -5'
7026 3' -56.6 NC_001875.2 + 55853 0.71 0.605476
Target:  5'- -uCGCgCAAAAGGUccGGGUCGUUGCUg -3'
miRNA:   3'- gcGUGgGUUUUCCGu-CCCAGCAGCGA- -5'
7026 3' -56.6 NC_001875.2 + 47630 0.72 0.544383
Target:  5'- gCGUACCUAuGAAGGCAGGGcgcaaggcUCGUucCGCUc -3'
miRNA:   3'- -GCGUGGGU-UUUCCGUCCC--------AGCA--GCGA- -5'
7026 3' -56.6 NC_001875.2 + 3426 0.73 0.475889
Target:  5'- gGguCCCAAGAGcGCu-GGUCGUCGCa -3'
miRNA:   3'- gCguGGGUUUUC-CGucCCAGCAGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.