miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7027 5' -50.6 NC_001875.2 + 5996 0.68 0.948679
Target:  5'- ----cAGCGCGUGCCgaaUGGGGGCc -3'
miRNA:   3'- uuuuaUCGUGCGCGGaaaGCUCUCGc -5'
7027 5' -50.6 NC_001875.2 + 9639 0.67 0.967693
Target:  5'- -----uGCGCGCGCCgugcgugUUUCGcGAGCu -3'
miRNA:   3'- uuuuauCGUGCGCGG-------AAAGCuCUCGc -5'
7027 5' -50.6 NC_001875.2 + 11561 0.67 0.968019
Target:  5'- -----cGUACGCGCCgccgaagCGGGgAGCGg -3'
miRNA:   3'- uuuuauCGUGCGCGGaaa----GCUC-UCGC- -5'
7027 5' -50.6 NC_001875.2 + 15085 0.66 0.981517
Target:  5'- -----cGCGCaGCGCCUggUUGAG-GCGg -3'
miRNA:   3'- uuuuauCGUG-CGCGGAa-AGCUCuCGC- -5'
7027 5' -50.6 NC_001875.2 + 16917 0.66 0.987234
Target:  5'- ----cGGCGCGgGCCUcgUGuuuGAGCGc -3'
miRNA:   3'- uuuuaUCGUGCgCGGAaaGCu--CUCGC- -5'
7027 5' -50.6 NC_001875.2 + 17064 0.93 0.077495
Target:  5'- aAAAAUAGCACGCG-CUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCgGAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 17129 0.86 0.187549
Target:  5'- aAAAAUAGCACaCGCCgUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGcGCGGaAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 17195 0.76 0.608494
Target:  5'- aAAAAUAGCACaCGCCgUUCGcGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGcGCGGaAAGCuCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 26270 0.67 0.974068
Target:  5'- cAAGAUGuaCACGCGCCU--UGAGuGCGa -3'
miRNA:   3'- -UUUUAUc-GUGCGCGGAaaGCUCuCGC- -5'
7027 5' -50.6 NC_001875.2 + 26785 0.74 0.737363
Target:  5'- ----gAGCgACGCGCCg-UCGAGGGUGg -3'
miRNA:   3'- uuuuaUCG-UGCGCGGaaAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 28926 0.74 0.737363
Target:  5'- --cGUGGC-CGCGUaUUUCGAGAGUGg -3'
miRNA:   3'- uuuUAUCGuGCGCGgAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 31980 0.69 0.928534
Target:  5'- --uGUGGCGCGCguacgGCCggUUUGuGAGCGg -3'
miRNA:   3'- uuuUAUCGUGCG-----CGGa-AAGCuCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 36650 0.67 0.979239
Target:  5'- gAAGAUGGCcgcgucguGCGCGCUgagcUCGGGGcGCGu -3'
miRNA:   3'- -UUUUAUCG--------UGCGCGGaa--AGCUCU-CGC- -5'
7027 5' -50.6 NC_001875.2 + 37575 0.66 0.988799
Target:  5'- cGAGUGG-AUGCGCCgg-CGcGAGCGc -3'
miRNA:   3'- uUUUAUCgUGCGCGGaaaGCuCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 45107 0.66 0.983602
Target:  5'- -----cGUGCGCGCCUUcaugugCGAcGAGCa -3'
miRNA:   3'- uuuuauCGUGCGCGGAAa-----GCU-CUCGc -5'
7027 5' -50.6 NC_001875.2 + 50556 0.68 0.964646
Target:  5'- -----cGCGCGUGUCUUUUGcGGGGCa -3'
miRNA:   3'- uuuuauCGUGCGCGGAAAGC-UCUCGc -5'
7027 5' -50.6 NC_001875.2 + 50976 0.68 0.964646
Target:  5'- ---uUGGCGCGCGCCgagUCGcucAGCu -3'
miRNA:   3'- uuuuAUCGUGCGCGGaa-AGCuc-UCGc -5'
7027 5' -50.6 NC_001875.2 + 51208 0.66 0.981517
Target:  5'- ---cUGGCGC-CGCCcgUCGAGcGCGc -3'
miRNA:   3'- uuuuAUCGUGcGCGGaaAGCUCuCGC- -5'
7027 5' -50.6 NC_001875.2 + 52355 0.66 0.987234
Target:  5'- ----cGGCGCGUGCCg--CGccagcguccaAGAGCGc -3'
miRNA:   3'- uuuuaUCGUGCGCGGaaaGC----------UCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 52446 0.67 0.979239
Target:  5'- gGAAAUGGUGUGCGCCga-CGAGgAGCu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGaaaGCUC-UCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.