miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7027 5' -50.6 NC_001875.2 + 31980 0.69 0.928534
Target:  5'- --uGUGGCGCGCguacgGCCggUUUGuGAGCGg -3'
miRNA:   3'- uuuUAUCGUGCG-----CGGa-AAGCuCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 130239 0.99 0.032688
Target:  5'- aAAAAUAGCACGCGCCgUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGaAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 130305 0.98 0.034643
Target:  5'- aAAAAUAGCACGCGCCgUUCGAGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGCGCGGaAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 130471 0.92 0.086787
Target:  5'- ---cUAGCACGCGCCgUUCGAGAGCGu -3'
miRNA:   3'- uuuuAUCGUGCGCGGaAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 129981 0.83 0.290564
Target:  5'- aAAAAUAGCACGCGCCUUUCaaaAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGcucUCGC- -5'
7027 5' -50.6 NC_001875.2 + 130111 0.8 0.432989
Target:  5'- ---cUAGCACaCGCCgUUCGAGAGCGu -3'
miRNA:   3'- uuuuAUCGUGcGCGGaAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 26785 0.74 0.737363
Target:  5'- ----gAGCgACGCGCCg-UCGAGGGUGg -3'
miRNA:   3'- uuuuaUCG-UGCGCGGaaAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 55319 0.73 0.754848
Target:  5'- -cAGUGGCgcgcgacggugaugACGCGCCgcUUCGGGGGCGc -3'
miRNA:   3'- uuUUAUCG--------------UGCGCGGa-AAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 74120 0.71 0.859613
Target:  5'- ---cUGGCGCGUguucGCCUagagcuggagUUCGAGGGCGc -3'
miRNA:   3'- uuuuAUCGUGCG----CGGA----------AAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 130173 0.99 0.032688
Target:  5'- aAAAAUAGCACGCGCCgUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGaAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 130047 0.99 0.032688
Target:  5'- aAAAAUAGCACGCGCCgUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGaAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 101461 1.01 0.021733
Target:  5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 101263 1.07 0.009843
Target:  5'- aAAAAUAGCACGCGCCUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 101527 1.07 0.009843
Target:  5'- aAAAAUAGCACGCGCCUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 101593 1.07 0.009843
Target:  5'- aAAAAUAGCACGCGCCUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 130371 1.07 0.009843
Target:  5'- aAAAGUAGCACGCGCCUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 130533 1.07 0.009843
Target:  5'- aAAAAUAGCACGCGCCUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 101197 1.01 0.021733
Target:  5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 101329 1.01 0.021733
Target:  5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 101395 1.01 0.021733
Target:  5'- aAAAAUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGAAAGCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.