Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7030 | 5' | -69.8 | NC_001876.1 | + | 199 | 0.85 | 0.002961 |
Target: 5'- nCCCCGC-CGCCcucaGCCCCGCccaGCGCCGCCg -3' miRNA: 3'- -GGGGCGcGCGG----CGGGGCG---CGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 224 | 1.1 | 0.000025 |
Target: 5'- gCCCCGCGCGCCGCCCCGCGCGCCGCCc -3' miRNA: 3'- -GGGGCGCGCGGCGGGGCGCGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 715 | 0.66 | 0.128221 |
Target: 5'- cUCCCGCGC-CUGuCCCCGCuucuGUGUCaCCc -3' miRNA: 3'- -GGGGCGCGcGGC-GGGGCG----CGCGGcGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 1821 | 0.69 | 0.069858 |
Target: 5'- uUCUCGUG-GaCCGUCuCUGCGUGCCGCUa -3' miRNA: 3'- -GGGGCGCgC-GGCGG-GGCGCGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 8796 | 0.67 | 0.101346 |
Target: 5'- gCCgCCGCGCuccuuuGCCGaagaagUCCGCGCcGCCGUa -3' miRNA: 3'- -GG-GGCGCG------CGGCg-----GGGCGCG-CGGCGg -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 8984 | 0.68 | 0.077744 |
Target: 5'- gCCCCGCaGUucggucagagGCCGCgCCGCGgGCUGg- -3' miRNA: 3'- -GGGGCG-CG----------CGGCGgGGCGCgCGGCgg -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 9430 | 0.74 | 0.025569 |
Target: 5'- cCCCCGCaGCGCCGCaaCGUGC-CCGUa -3' miRNA: 3'- -GGGGCG-CGCGGCGggGCGCGcGGCGg -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 10998 | 0.7 | 0.061079 |
Target: 5'- aCCUGgGCuCCGCCaacuCGCGCGaCCGCg -3' miRNA: 3'- gGGGCgCGcGGCGGg---GCGCGC-GGCGg -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 11579 | 0.69 | 0.071754 |
Target: 5'- gCCCgGUGCGCuCGCgCUGCGC-CagaGCCu -3' miRNA: 3'- -GGGgCGCGCG-GCGgGGCGCGcGg--CGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 12477 | 0.73 | 0.03362 |
Target: 5'- gUCUCGCGCGCacacaCCaCCGC-CGCCGCCc -3' miRNA: 3'- -GGGGCGCGCGgc---GG-GGCGcGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 12511 | 0.79 | 0.010885 |
Target: 5'- aCgCGgGCGCCgaaGCCgCCGCGUGCCGCCc -3' miRNA: 3'- gGgGCgCGCGG---CGG-GGCGCGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 12704 | 0.72 | 0.040691 |
Target: 5'- gCCUCGCGCGCCcggcgacgcGCCUCucuGCGCcuguGCCGCUc -3' miRNA: 3'- -GGGGCGCGCGG---------CGGGG---CGCG----CGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 14717 | 0.67 | 0.105147 |
Target: 5'- gCCCC-CGCaCUGCCCUGCagcgacggguucguaGCGUaCGCCg -3' miRNA: 3'- -GGGGcGCGcGGCGGGGCG---------------CGCG-GCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 14773 | 0.71 | 0.046612 |
Target: 5'- gCCCGCaGgGUgGgCCgGCGCGCgGCCg -3' miRNA: 3'- gGGGCG-CgCGgCgGGgCGCGCGgCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 14831 | 0.77 | 0.01602 |
Target: 5'- -gCCGCGCGCCGgcccaCCCUGCGgGCCcucGCCa -3' miRNA: 3'- ggGGCGCGCGGC-----GGGGCGCgCGG---CGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 14900 | 0.69 | 0.071754 |
Target: 5'- aCCCaGUagauguuacgGCGUCGCCgaGCugGCGCCGCCa -3' miRNA: 3'- gGGG-CG----------CGCGGCGGggCG--CGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 15349 | 0.67 | 0.104047 |
Target: 5'- uCCCgGCGUgGCCguuaguuucacGCCCgGCGCG-CGCUc -3' miRNA: 3'- -GGGgCGCG-CGG-----------CGGGgCGCGCgGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 16053 | 0.71 | 0.046235 |
Target: 5'- gCCCCGCGUGCaccgugcuacuaggCGUaCUGCGCGCgGCUu -3' miRNA: 3'- -GGGGCGCGCG--------------GCGgGGCGCGCGgCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 16175 | 0.78 | 0.012847 |
Target: 5'- gCCUGCcCGCCGUCCgG-GCGCCGCCg -3' miRNA: 3'- gGGGCGcGCGGCGGGgCgCGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 16225 | 0.78 | 0.012847 |
Target: 5'- uCCCCGCcucaGCGCUGCCgcggCCGCgGCGCUGCUg -3' miRNA: 3'- -GGGGCG----CGCGGCGG----GGCG-CGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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