miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7030 5' -69.8 NC_001876.1 + 34223 1.1 0.000025
Target:  5'- gCCCCGCGCGCCGCCCCGCGCGCCGCCc -3'
miRNA:   3'- -GGGGCGCGCGGCGGGGCGCGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 715 0.66 0.128221
Target:  5'- cUCCCGCGC-CUGuCCCCGCuucuGUGUCaCCc -3'
miRNA:   3'- -GGGGCGCGcGGC-GGGGCG----CGCGGcGG- -5'
7030 5' -69.8 NC_001876.1 + 25383 0.66 0.124937
Target:  5'- gCCgCCGgaGUGCCaGCgCgGCGCGCCcucGCCc -3'
miRNA:   3'- -GG-GGCg-CGCGG-CGgGgCGCGCGG---CGG- -5'
7030 5' -69.8 NC_001876.1 + 14717 0.67 0.105147
Target:  5'- gCCCC-CGCaCUGCCCUGCagcgacggguucguaGCGUaCGCCg -3'
miRNA:   3'- -GGGGcGCGcGGCGGGGCG---------------CGCG-GCGG- -5'
7030 5' -69.8 NC_001876.1 + 26891 0.67 0.104047
Target:  5'- aCCCUcCGCGUCucCCCCGCGCugggaaCUGCCc -3'
miRNA:   3'- -GGGGcGCGCGGc-GGGGCGCGc-----GGCGG- -5'
7030 5' -69.8 NC_001876.1 + 15349 0.67 0.104047
Target:  5'- uCCCgGCGUgGCCguuaguuucacGCCCgGCGCG-CGCUc -3'
miRNA:   3'- -GGGgCGCG-CGG-----------CGGGgCGCGCgGCGG- -5'
7030 5' -69.8 NC_001876.1 + 17167 0.68 0.088802
Target:  5'- gCCUagaGCGUCGCCCCaC-CGCUGCCg -3'
miRNA:   3'- gGGGcg-CGCGGCGGGGcGcGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 8984 0.68 0.077744
Target:  5'- gCCCCGCaGUucggucagagGCCGCgCCGCGgGCUGg- -3'
miRNA:   3'- -GGGGCG-CG----------CGGCGgGGCGCgCGGCgg -5'
7030 5' -69.8 NC_001876.1 + 1821 0.69 0.069858
Target:  5'- uUCUCGUG-GaCCGUCuCUGCGUGCCGCUa -3'
miRNA:   3'- -GGGGCGCgC-GGCGG-GGCGCGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 10998 0.7 0.061079
Target:  5'- aCCUGgGCuCCGCCaacuCGCGCGaCCGCg -3'
miRNA:   3'- gGGGCgCGcGGCGGg---GCGCGC-GGCGg -5'
7030 5' -69.8 NC_001876.1 + 34248 0.85 0.002961
Target:  5'- nCCCCGC-CGCCcucaGCCCCGCccaGCGCCGCCg -3'
miRNA:   3'- -GGGGCGcGCGG----CGGGGCG---CGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 16175 0.78 0.012847
Target:  5'- gCCUGCcCGCCGUCCgG-GCGCCGCCg -3'
miRNA:   3'- gGGGCGcGCGGCGGGgCgCGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 16225 0.78 0.012847
Target:  5'- uCCCCGCcucaGCGCUGCCgcggCCGCgGCGCUGCUg -3'
miRNA:   3'- -GGGGCG----CGCGGCGG----GGCG-CGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 12477 0.73 0.03362
Target:  5'- gUCUCGCGCGCacacaCCaCCGC-CGCCGCCc -3'
miRNA:   3'- -GGGGCGCGCGgc---GG-GGCGcGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 16053 0.71 0.046235
Target:  5'- gCCCCGCGUGCaccgugcuacuaggCGUaCUGCGCGCgGCUu -3'
miRNA:   3'- -GGGGCGCGCG--------------GCGgGGCGCGCGgCGG- -5'
7030 5' -69.8 NC_001876.1 + 14773 0.71 0.046612
Target:  5'- gCCCGCaGgGUgGgCCgGCGCGCgGCCg -3'
miRNA:   3'- gGGGCG-CgCGgCgGGgCGCGCGgCGG- -5'
7030 5' -69.8 NC_001876.1 + 25428 0.7 0.057875
Target:  5'- cUCCCaaGCGUGCucgggCGCCCCGC-CGCC-CCa -3'
miRNA:   3'- -GGGG--CGCGCG-----GCGGGGCGcGCGGcGG- -5'
7030 5' -69.8 NC_001876.1 + 224 1.1 0.000025
Target:  5'- gCCCCGCGCGCCGCCCCGCGCGCCGCCc -3'
miRNA:   3'- -GGGGCGCGCGGCGGGGCGCGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 22483 0.66 0.1186
Target:  5'- --gCGCGCGCCGaUCCUGaGCcccCCGCCg -3'
miRNA:   3'- gggGCGCGCGGC-GGGGCgCGc--GGCGG- -5'
7030 5' -69.8 NC_001876.1 + 26155 0.66 0.109655
Target:  5'- gCCCGCaGCGCCuccGCCCgCGauuugaGCGCCa-- -3'
miRNA:   3'- gGGGCG-CGCGG---CGGG-GCg-----CGCGGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.