Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7030 | 5' | -69.8 | NC_001876.1 | + | 12511 | 0.79 | 0.010885 |
Target: 5'- aCgCGgGCGCCgaaGCCgCCGCGUGCCGCCc -3' miRNA: 3'- gGgGCgCGCGG---CGG-GGCGCGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 16634 | 0.83 | 0.004614 |
Target: 5'- cCCCCGCGCaggcgGCCGCcgCCCGCGCGCCuucugcggcgGCCg -3' miRNA: 3'- -GGGGCGCG-----CGGCG--GGGCGCGCGG----------CGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 199 | 0.85 | 0.002961 |
Target: 5'- nCCCCGC-CGCCcucaGCCCCGCccaGCGCCGCCg -3' miRNA: 3'- -GGGGCGcGCGG----CGGGGCG---CGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 11579 | 0.69 | 0.071754 |
Target: 5'- gCCCgGUGCGCuCGCgCUGCGC-CagaGCCu -3' miRNA: 3'- -GGGgCGCGCG-GCGgGGCGCGcGg--CGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 14900 | 0.69 | 0.071754 |
Target: 5'- aCCCaGUagauguuacgGCGUCGCCgaGCugGCGCCGCCa -3' miRNA: 3'- gGGG-CG----------CGCGGCGGggCG--CGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 17694 | 0.68 | 0.08421 |
Target: 5'- aCCgCUGCGCGCC-CCCUcaauaGCaCCGCCg -3' miRNA: 3'- -GG-GGCGCGCGGcGGGGcg---CGcGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 8796 | 0.67 | 0.101346 |
Target: 5'- gCCgCCGCGCuccuuuGCCGaagaagUCCGCGCcGCCGUa -3' miRNA: 3'- -GG-GGCGCG------CGGCg-----GGGCGCG-CGGCGg -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 22396 | 0.66 | 0.109655 |
Target: 5'- gCCgCCGCuC-CCGCCCUGCcgGCGgCCaGCCg -3' miRNA: 3'- -GG-GGCGcGcGGCGGGGCG--CGC-GG-CGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 26155 | 0.66 | 0.109655 |
Target: 5'- gCCCGCaGCGCCuccGCCCgCGauuugaGCGCCa-- -3' miRNA: 3'- gGGGCG-CGCGG---CGGG-GCg-----CGCGGcgg -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 22483 | 0.66 | 0.1186 |
Target: 5'- --gCGCGCGCCGaUCCUGaGCcccCCGCCg -3' miRNA: 3'- gggGCGCGCGGC-GGGGCgCGc--GGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 17078 | 0.66 | 0.124937 |
Target: 5'- gCCCGCauugcuGUGCCaggcccgagaGCCCCaguucuuaaCGCGCUGCCc -3' miRNA: 3'- gGGGCG------CGCGG----------CGGGGc--------GCGCGGCGG- -5' |
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7030 | 5' | -69.8 | NC_001876.1 | + | 224 | 1.1 | 0.000025 |
Target: 5'- gCCCCGCGCGCCGCCCCGCGCGCCGCCc -3' miRNA: 3'- -GGGGCGCGCGGCGGGGCGCGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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