miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7030 5' -69.8 NC_001876.1 + 12704 0.72 0.040691
Target:  5'- gCCUCGCGCGCCcggcgacgcGCCUCucuGCGCcuguGCCGCUc -3'
miRNA:   3'- -GGGGCGCGCGG---------CGGGG---CGCG----CGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 12477 0.73 0.03362
Target:  5'- gUCUCGCGCGCacacaCCaCCGC-CGCCGCCc -3'
miRNA:   3'- -GGGGCGCGCGgc---GG-GGCGcGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 9430 0.74 0.025569
Target:  5'- cCCCCGCaGCGCCGCaaCGUGC-CCGUa -3'
miRNA:   3'- -GGGGCG-CGCGGCGggGCGCGcGGCGg -5'
7030 5' -69.8 NC_001876.1 + 14831 0.77 0.01602
Target:  5'- -gCCGCGCGCCGgcccaCCCUGCGgGCCcucGCCa -3'
miRNA:   3'- ggGGCGCGCGGC-----GGGGCGCgCGG---CGG- -5'
7030 5' -69.8 NC_001876.1 + 16175 0.78 0.012847
Target:  5'- gCCUGCcCGCCGUCCgG-GCGCCGCCg -3'
miRNA:   3'- gGGGCGcGCGGCGGGgCgCGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 16225 0.78 0.012847
Target:  5'- uCCCCGCcucaGCGCUGCCgcggCCGCgGCGCUGCUg -3'
miRNA:   3'- -GGGGCG----CGCGGCGG----GGCG-CGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 12511 0.79 0.010885
Target:  5'- aCgCGgGCGCCgaaGCCgCCGCGUGCCGCCc -3'
miRNA:   3'- gGgGCgCGCGG---CGG-GGCGCGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 16634 0.83 0.004614
Target:  5'- cCCCCGCGCaggcgGCCGCcgCCCGCGCGCCuucugcggcgGCCg -3'
miRNA:   3'- -GGGGCGCG-----CGGCG--GGGCGCGCGG----------CGG- -5'
7030 5' -69.8 NC_001876.1 + 34248 0.85 0.002961
Target:  5'- nCCCCGC-CGCCcucaGCCCCGCccaGCGCCGCCg -3'
miRNA:   3'- -GGGGCGcGCGG----CGGGGCG---CGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 199 0.85 0.002961
Target:  5'- nCCCCGC-CGCCcucaGCCCCGCccaGCGCCGCCg -3'
miRNA:   3'- -GGGGCGcGCGG----CGGGGCG---CGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 34223 1.1 0.000025
Target:  5'- gCCCCGCGCGCCGCCCCGCGCGCCGCCc -3'
miRNA:   3'- -GGGGCGCGCGGCGGGGCGCGCGGCGG- -5'
7030 5' -69.8 NC_001876.1 + 224 1.1 0.000025
Target:  5'- gCCCCGCGCGCCGCCCCGCGCGCCGCCc -3'
miRNA:   3'- -GGGGCGCGCGGCGGGGCGCGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.