miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7034 3' -52 NC_001876.1 + 4971 1.12 0.000715
Target:  5'- gCGACGAAAAGUUCGGCACCAGCAGGCu -3'
miRNA:   3'- -GCUGCUUUUCAAGCCGUGGUCGUCCG- -5'
7034 3' -52 NC_001876.1 + 25122 0.74 0.326868
Target:  5'- gGGCaaGAAGAGUaggUGGgACCAGCAGGUc -3'
miRNA:   3'- gCUG--CUUUUCAa--GCCgUGGUCGUCCG- -5'
7034 3' -52 NC_001876.1 + 16244 0.74 0.335363
Target:  5'- aCGGCGgcGAcggCGGCGCCcggacGGCGGGCa -3'
miRNA:   3'- -GCUGCuuUUcaaGCCGUGG-----UCGUCCG- -5'
7034 3' -52 NC_001876.1 + 27226 0.71 0.491919
Target:  5'- aGGCGAGgccGGGUcgUUGGCAUaCGGCGGGUc -3'
miRNA:   3'- gCUGCUU---UUCA--AGCCGUG-GUCGUCCG- -5'
7034 3' -52 NC_001876.1 + 34293 0.69 0.604887
Target:  5'- gGGCGGcgGGggCGGCGCgCGGgGcGGCg -3'
miRNA:   3'- gCUGCUuuUCaaGCCGUG-GUCgU-CCG- -5'
7034 3' -52 NC_001876.1 + 16560 0.69 0.604887
Target:  5'- --------uGUUCGGCGCCGGCGccGGCc -3'
miRNA:   3'- gcugcuuuuCAAGCCGUGGUCGU--CCG- -5'
7034 3' -52 NC_001876.1 + 22571 0.69 0.604887
Target:  5'- -cGCGAGccacGAGUUCGGCugacAgCAGCGGGg -3'
miRNA:   3'- gcUGCUU----UUCAAGCCG----UgGUCGUCCg -5'
7034 3' -52 NC_001876.1 + 154 0.69 0.604887
Target:  5'- gGGCGGcgGGggCGGCGCgCGGgGcGGCg -3'
miRNA:   3'- gCUGCUuuUCaaGCCGUG-GUCgU-CCG- -5'
7034 3' -52 NC_001876.1 + 14811 0.68 0.639717
Target:  5'- aGACGcggccauGGccauggCGGCGCCAGCucGGCg -3'
miRNA:   3'- gCUGCuuu----UCaa----GCCGUGGUCGu-CCG- -5'
7034 3' -52 NC_001876.1 + 22786 0.68 0.651327
Target:  5'- gCGGCGGGcGGcUCGGgGCUgcuGGUGGGCg -3'
miRNA:   3'- -GCUGCUUuUCaAGCCgUGG---UCGUCCG- -5'
7034 3' -52 NC_001876.1 + 9211 0.68 0.661759
Target:  5'- uGAgGAGAaaauuaaAGUaCGcGCACC-GCAGGCg -3'
miRNA:   3'- gCUgCUUU-------UCAaGC-CGUGGuCGUCCG- -5'
7034 3' -52 NC_001876.1 + 14709 0.68 0.662917
Target:  5'- gCGGCGc------CGGUACUGGCGGGCg -3'
miRNA:   3'- -GCUGCuuuucaaGCCGUGGUCGUCCG- -5'
7034 3' -52 NC_001876.1 + 3249 0.68 0.674475
Target:  5'- aGugGucGGGUUCGGUGCaggauaAGaCGGGCu -3'
miRNA:   3'- gCugCuuUUCAAGCCGUGg-----UC-GUCCG- -5'
7034 3' -52 NC_001876.1 + 17413 0.67 0.685989
Target:  5'- aCGACGA--GGUUaUGGCACC-GCAGcCg -3'
miRNA:   3'- -GCUGCUuuUCAA-GCCGUGGuCGUCcG- -5'
7034 3' -52 NC_001876.1 + 29684 0.67 0.697446
Target:  5'- gGGCgcaGAAGGGUUaaCGGUGCCGGCGguuacGGCu -3'
miRNA:   3'- gCUG---CUUUUCAA--GCCGUGGUCGU-----CCG- -5'
7034 3' -52 NC_001876.1 + 12571 0.67 0.708832
Target:  5'- aGGCGuuaggagcaaAGAGGUccgCGGCACCGgGC-GGCg -3'
miRNA:   3'- gCUGC----------UUUUCAa--GCCGUGGU-CGuCCG- -5'
7034 3' -52 NC_001876.1 + 12981 0.67 0.708832
Target:  5'- gCGGCGGGAcAGcggaaUUGGCugCAGUucGGGCu -3'
miRNA:   3'- -GCUGCUUU-UCa----AGCCGugGUCG--UCCG- -5'
7034 3' -52 NC_001876.1 + 17496 0.67 0.708832
Target:  5'- uGGCGcccuGcUCGGCACCAGagucGGCu -3'
miRNA:   3'- gCUGCuuuuCaAGCCGUGGUCgu--CCG- -5'
7034 3' -52 NC_001876.1 + 1551 0.67 0.708832
Target:  5'- uGugGAAGAGg-CGGCugUGGCuGGg -3'
miRNA:   3'- gCugCUUUUCaaGCCGugGUCGuCCg -5'
7034 3' -52 NC_001876.1 + 16480 0.67 0.712231
Target:  5'- aGACuGAGAauaccggucgcccucAGUggcCGGCGCCGGCgccgaacAGGCu -3'
miRNA:   3'- gCUG-CUUU---------------UCAa--GCCGUGGUCG-------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.