Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7034 | 3' | -52 | NC_001876.1 | + | 16560 | 0.69 | 0.604887 |
Target: 5'- --------uGUUCGGCGCCGGCGccGGCc -3' miRNA: 3'- gcugcuuuuCAAGCCGUGGUCGU--CCG- -5' |
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7034 | 3' | -52 | NC_001876.1 | + | 34293 | 0.69 | 0.604887 |
Target: 5'- gGGCGGcgGGggCGGCGCgCGGgGcGGCg -3' miRNA: 3'- gCUGCUuuUCaaGCCGUG-GUCgU-CCG- -5' |
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7034 | 3' | -52 | NC_001876.1 | + | 27226 | 0.71 | 0.491919 |
Target: 5'- aGGCGAGgccGGGUcgUUGGCAUaCGGCGGGUc -3' miRNA: 3'- gCUGCUU---UUCA--AGCCGUG-GUCGUCCG- -5' |
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7034 | 3' | -52 | NC_001876.1 | + | 16244 | 0.74 | 0.335363 |
Target: 5'- aCGGCGgcGAcggCGGCGCCcggacGGCGGGCa -3' miRNA: 3'- -GCUGCuuUUcaaGCCGUGG-----UCGUCCG- -5' |
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7034 | 3' | -52 | NC_001876.1 | + | 25122 | 0.74 | 0.326868 |
Target: 5'- gGGCaaGAAGAGUaggUGGgACCAGCAGGUc -3' miRNA: 3'- gCUG--CUUUUCAa--GCCgUGGUCGUCCG- -5' |
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7034 | 3' | -52 | NC_001876.1 | + | 4971 | 1.12 | 0.000715 |
Target: 5'- gCGACGAAAAGUUCGGCACCAGCAGGCu -3' miRNA: 3'- -GCUGCUUUUCAAGCCGUGGUCGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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