miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7108 5' -61 NC_001895.1 + 5744 1.09 0.000126
Target:  5'- cAGCGCACCGGCGGCAUCACCACCGUCa -3'
miRNA:   3'- -UCGCGUGGCCGCCGUAGUGGUGGCAG- -5'
7108 5' -61 NC_001895.1 + 20640 0.78 0.035861
Target:  5'- uGCGCACCGGCuGCAUCAUCuCCGa- -3'
miRNA:   3'- uCGCGUGGCCGcCGUAGUGGuGGCag -5'
7108 5' -61 NC_001895.1 + 23052 0.74 0.078826
Target:  5'- gGGCGCACCGGaUGuaGUCACCAuCCG-Cg -3'
miRNA:   3'- -UCGCGUGGCC-GCcgUAGUGGU-GGCaG- -5'
7108 5' -61 NC_001895.1 + 5487 0.73 0.083491
Target:  5'- cAGCGCACCGGCaauaucgccGGUAUCcagacGCCacagcaugACCGUCa -3'
miRNA:   3'- -UCGCGUGGCCG---------CCGUAG-----UGG--------UGGCAG- -5'
7108 5' -61 NC_001895.1 + 12783 0.72 0.101689
Target:  5'- -cCGCGCCGGgaaggcggaagguCGGCAUUACCacgaugGCCGUCg -3'
miRNA:   3'- ucGCGUGGCC-------------GCCGUAGUGG------UGGCAG- -5'
7108 5' -61 NC_001895.1 + 17823 0.71 0.123925
Target:  5'- aGGCaCGCUGGCGGCAUCguugcagGCCAUCGc- -3'
miRNA:   3'- -UCGcGUGGCCGCCGUAG-------UGGUGGCag -5'
7108 5' -61 NC_001895.1 + 6679 0.71 0.135151
Target:  5'- cGGCgGUGCCGuGUGGCAgCACCGCCcccaGUCa -3'
miRNA:   3'- -UCG-CGUGGC-CGCCGUaGUGGUGG----CAG- -5'
7108 5' -61 NC_001895.1 + 10397 0.7 0.138968
Target:  5'- cGCGUgcagACCGGCGGCAUgugCACCgACUGg- -3'
miRNA:   3'- uCGCG----UGGCCGCCGUA---GUGG-UGGCag -5'
7108 5' -61 NC_001895.1 + 7746 0.7 0.151017
Target:  5'- cAGCGauuCCGGCGGCAgcUC-CCGcCCGUa -3'
miRNA:   3'- -UCGCgu-GGCCGCCGU--AGuGGU-GGCAg -5'
7108 5' -61 NC_001895.1 + 10686 0.69 0.168558
Target:  5'- gAGUGCACUGGUuucgGGUucauauucaAUCACCGCCccGUCa -3'
miRNA:   3'- -UCGCGUGGCCG----CCG---------UAGUGGUGG--CAG- -5'
7108 5' -61 NC_001895.1 + 18302 0.69 0.17322
Target:  5'- cAGCGCACgGGCGGUggCAUaCGCgGUg -3'
miRNA:   3'- -UCGCGUGgCCGCCGuaGUG-GUGgCAg -5'
7108 5' -61 NC_001895.1 + 20704 0.69 0.181409
Target:  5'- cAGCGUgACCGGCguugccgccugaauGGCAUCAacauccCCACCGg- -3'
miRNA:   3'- -UCGCG-UGGCCG--------------CCGUAGU------GGUGGCag -5'
7108 5' -61 NC_001895.1 + 8293 0.69 0.18289
Target:  5'- uGGUGCaACCGGCgcacagcaucaGGCAggUCAgCACCGUa -3'
miRNA:   3'- -UCGCG-UGGCCG-----------CCGU--AGUgGUGGCAg -5'
7108 5' -61 NC_001895.1 + 6609 0.69 0.18488
Target:  5'- uGGCugaACUGGgGGCGgugcugccacacggCACCGCCGUCg -3'
miRNA:   3'- -UCGcg-UGGCCgCCGUa-------------GUGGUGGCAG- -5'
7108 5' -61 NC_001895.1 + 21457 0.69 0.187395
Target:  5'- cGGUGCACUGGCgcuuacuGGCAUCAUCGgUGcCa -3'
miRNA:   3'- -UCGCGUGGCCG-------CCGUAGUGGUgGCaG- -5'
7108 5' -61 NC_001895.1 + 11579 0.69 0.187901
Target:  5'- aGGUcauUACCGGCGGCAcaggccagcaUCACCGcCCGUg -3'
miRNA:   3'- -UCGc--GUGGCCGCCGU----------AGUGGU-GGCAg -5'
7108 5' -61 NC_001895.1 + 6774 0.69 0.193034
Target:  5'- aGGUGCuuGCCGGUGGUgaaccuAUCACCcCgCGUCu -3'
miRNA:   3'- -UCGCG--UGGCCGCCG------UAGUGGuG-GCAG- -5'
7108 5' -61 NC_001895.1 + 20551 0.68 0.214805
Target:  5'- aGGCGCGCCagcucGGCGaCAaUACCGCCGcCu -3'
miRNA:   3'- -UCGCGUGG-----CCGCcGUaGUGGUGGCaG- -5'
7108 5' -61 NC_001895.1 + 13403 0.68 0.220568
Target:  5'- cGCGCugUGGUGGCGUcCugUGCgGUa -3'
miRNA:   3'- uCGCGugGCCGCCGUA-GugGUGgCAg -5'
7108 5' -61 NC_001895.1 + 29959 0.67 0.244946
Target:  5'- aGGUGUgggaGCCGGUaacgaaGUAUCACCACCGg- -3'
miRNA:   3'- -UCGCG----UGGCCGc-----CGUAGUGGUGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.