Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7108 | 5' | -61 | NC_001895.1 | + | 4784 | 0.67 | 0.244946 |
|
Target: 5'- gGGCGUcagcuACUGGCGGaCAaguauuUCcCCAUCGUCa -3' miRNA: 3'- -UCGCG-----UGGCCGCC-GU------AGuGGUGGCAG- -5' |
|||||||
| 7108 | 5' | -61 | NC_001895.1 | + | 21688 | 0.67 | 0.251381 |
|
Target: 5'- -aCGCACCGGCgacaauGGCAgcCACCACgGcCa -3' miRNA: 3'- ucGCGUGGCCG------CCGUa-GUGGUGgCaG- -5' |
|||||||
| 7108 | 5' | -61 | NC_001895.1 | + | 4746 | 0.67 | 0.251381 |
|
Target: 5'- cAGUGCAUCaaGGCuGGCAuaaUCACCGCCc-- -3' miRNA: 3'- -UCGCGUGG--CCG-CCGU---AGUGGUGGcag -5' |
|||||||
| 7108 | 5' | -61 | NC_001895.1 | + | 1713 | 0.67 | 0.264667 |
|
Target: 5'- -aCGCAuCCGGCGcUGUCGCCACgGUg -3' miRNA: 3'- ucGCGU-GGCCGCcGUAGUGGUGgCAg -5' |
|||||||
| 7108 | 5' | -61 | NC_001895.1 | + | 5254 | 0.66 | 0.285655 |
|
Target: 5'- gGGCGgcuuccCGCUGcGCGGuCAUCGCUGCCGa- -3' miRNA: 3'- -UCGC------GUGGC-CGCC-GUAGUGGUGGCag -5' |
|||||||
| 7108 | 5' | -61 | NC_001895.1 | + | 1765 | 0.66 | 0.292937 |
|
Target: 5'- uGGCgacaGCGCCGGauGCGUgguacuggCACCGCCGg- -3' miRNA: 3'- -UCG----CGUGGCCgcCGUA--------GUGGUGGCag -5' |
|||||||
| 7108 | 5' | -61 | NC_001895.1 | + | 1548 | 0.66 | 0.300363 |
|
Target: 5'- -aCGCcgacaccgagGCCGGUGGCAUCAaUACCGa- -3' miRNA: 3'- ucGCG----------UGGCCGCCGUAGUgGUGGCag -5' |
|||||||
| 7108 | 5' | -61 | NC_001895.1 | + | 17677 | 0.66 | 0.300363 |
|
Target: 5'- gAGgGCACCcGCGuCAUUuCCACCGUa -3' miRNA: 3'- -UCgCGUGGcCGCcGUAGuGGUGGCAg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home