miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7112 3' -52.6 NC_001895.1 + 9263 0.66 0.744352
Target:  5'- ---aCUGAUGcacACUGGCGAUuuUCGGCg -3'
miRNA:   3'- agugGACUAU---UGGCCGCUAugGGUCG- -5'
7112 3' -52.6 NC_001895.1 + 2128 0.66 0.744352
Target:  5'- ---aCUGuuUAACCGGgGAcGCgCCAGCg -3'
miRNA:   3'- agugGACu-AUUGGCCgCUaUG-GGUCG- -5'
7112 3' -52.6 NC_001895.1 + 11077 0.66 0.744352
Target:  5'- aUCACCcgUGAgccGACCGGUG-UGCgCAGg -3'
miRNA:   3'- -AGUGG--ACUa--UUGGCCGCuAUGgGUCg -5'
7112 3' -52.6 NC_001895.1 + 4166 0.66 0.744352
Target:  5'- uUCACCguugAACCGuCGGUcACCCAGa -3'
miRNA:   3'- -AGUGGacuaUUGGCcGCUA-UGGGUCg -5'
7112 3' -52.6 NC_001895.1 + 19062 0.66 0.733298
Target:  5'- aCGCCgc--AACCGGUgugGAUGCCguGCc -3'
miRNA:   3'- aGUGGacuaUUGGCCG---CUAUGGguCG- -5'
7112 3' -52.6 NC_001895.1 + 5575 0.66 0.729959
Target:  5'- cUACCUccucGGUGAacauguaCGGCGGgguacggcgguguuUACCCGGCa -3'
miRNA:   3'- aGUGGA----CUAUUg------GCCGCU--------------AUGGGUCG- -5'
7112 3' -52.6 NC_001895.1 + 8902 0.66 0.722132
Target:  5'- cCAUCgggcgGGUGACCGGC----UCCGGCg -3'
miRNA:   3'- aGUGGa----CUAUUGGCCGcuauGGGUCG- -5'
7112 3' -52.6 NC_001895.1 + 21082 0.66 0.699515
Target:  5'- -gGCCaguuuUGAgaaaAACCGGCucGGUacuGCCCAGCa -3'
miRNA:   3'- agUGG-----ACUa---UUGGCCG--CUA---UGGGUCG- -5'
7112 3' -52.6 NC_001895.1 + 10570 0.66 0.697236
Target:  5'- cUCGCCgucugugUCGGCgGAUGCCCuGCa -3'
miRNA:   3'- -AGUGGacuauu-GGCCG-CUAUGGGuCG- -5'
7112 3' -52.6 NC_001895.1 + 21438 0.67 0.64888
Target:  5'- cCAUCggcaucauuGCCGGCGGUGCaCUGGCg -3'
miRNA:   3'- aGUGGacuau----UGGCCGCUAUG-GGUCG- -5'
7112 3' -52.6 NC_001895.1 + 20434 0.67 0.641926
Target:  5'- -----cGAUGGCCGGUguuaagcuacuGAUGCCCGGUu -3'
miRNA:   3'- aguggaCUAUUGGCCG-----------CUAUGGGUCG- -5'
7112 3' -52.6 NC_001895.1 + 21575 0.67 0.641926
Target:  5'- cCGCgaUGAUGgcauugauGCCGGUGAUAaCCGGCc -3'
miRNA:   3'- aGUGg-ACUAU--------UGGCCGCUAUgGGUCG- -5'
7112 3' -52.6 NC_001895.1 + 1683 0.69 0.561169
Target:  5'- cCACCggccaccACCGGCGGUGCC-AGUa -3'
miRNA:   3'- aGUGGacuau--UGGCCGCUAUGGgUCG- -5'
7112 3' -52.6 NC_001895.1 + 22244 0.69 0.561169
Target:  5'- gCAuCCUG-UAACUGGCGGUcaagcugugucCCCGGCg -3'
miRNA:   3'- aGU-GGACuAUUGGCCGCUAu----------GGGUCG- -5'
7112 3' -52.6 NC_001895.1 + 3542 0.69 0.549808
Target:  5'- gUCACC-GAUGAcCCGGCaa-GCCuCGGCa -3'
miRNA:   3'- -AGUGGaCUAUU-GGCCGcuaUGG-GUCG- -5'
7112 3' -52.6 NC_001895.1 + 5421 0.7 0.494241
Target:  5'- gCGUCUGGauACCGGCGAUAUugCCGGUg -3'
miRNA:   3'- aGUGGACUauUGGCCGCUAUG--GGUCG- -5'
7112 3' -52.6 NC_001895.1 + 5945 0.7 0.483427
Target:  5'- aUCACCUGAcacUGcACCGGCGuccaccGCCCGa- -3'
miRNA:   3'- -AGUGGACU---AU-UGGCCGCua----UGGGUcg -5'
7112 3' -52.6 NC_001895.1 + 8080 0.7 0.462151
Target:  5'- gUCugCUGAccGCUGGCGAcguuguucgcccUGUCCAGCg -3'
miRNA:   3'- -AGugGACUauUGGCCGCU------------AUGGGUCG- -5'
7112 3' -52.6 NC_001895.1 + 10995 0.71 0.431192
Target:  5'- -aGCCaGAguAUCGGCGAUAUCCuGCg -3'
miRNA:   3'- agUGGaCUauUGGCCGCUAUGGGuCG- -5'
7112 3' -52.6 NC_001895.1 + 8233 0.71 0.41124
Target:  5'- -uGCCUGAUGcugugcGCCGGU--UGCaCCAGCg -3'
miRNA:   3'- agUGGACUAU------UGGCCGcuAUG-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.