Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7112 | 3' | -52.6 | NC_001895.1 | + | 20434 | 0.67 | 0.641926 |
Target: 5'- -----cGAUGGCCGGUguuaagcuacuGAUGCCCGGUu -3' miRNA: 3'- aguggaCUAUUGGCCG-----------CUAUGGGUCG- -5' |
|||||||
7112 | 3' | -52.6 | NC_001895.1 | + | 21082 | 0.66 | 0.699515 |
Target: 5'- -gGCCaguuuUGAgaaaAACCGGCucGGUacuGCCCAGCa -3' miRNA: 3'- agUGG-----ACUa---UUGGCCG--CUA---UGGGUCG- -5' |
|||||||
7112 | 3' | -52.6 | NC_001895.1 | + | 21438 | 0.67 | 0.64888 |
Target: 5'- cCAUCggcaucauuGCCGGCGGUGCaCUGGCg -3' miRNA: 3'- aGUGGacuau----UGGCCGCUAUG-GGUCG- -5' |
|||||||
7112 | 3' | -52.6 | NC_001895.1 | + | 21575 | 0.67 | 0.641926 |
Target: 5'- cCGCgaUGAUGgcauugauGCCGGUGAUAaCCGGCc -3' miRNA: 3'- aGUGg-ACUAU--------UGGCCGCUAUgGGUCG- -5' |
|||||||
7112 | 3' | -52.6 | NC_001895.1 | + | 22244 | 0.69 | 0.561169 |
Target: 5'- gCAuCCUG-UAACUGGCGGUcaagcugugucCCCGGCg -3' miRNA: 3'- aGU-GGACuAUUGGCCGCUAu----------GGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home