miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7114 3' -59 NC_001895.1 + 7826 1.12 0.000149
Target:  5'- gCCACCACCACUACCAGAGCCGCCGCCc -3'
miRNA:   3'- -GGUGGUGGUGAUGGUCUCGGCGGCGG- -5'
7114 3' -59 NC_001895.1 + 5905 0.76 0.076086
Target:  5'- gCGCC-CCGC-GCCAGGGCgGCaCGCCg -3'
miRNA:   3'- gGUGGuGGUGaUGGUCUCGgCG-GCGG- -5'
7114 3' -59 NC_001895.1 + 18237 0.76 0.087102
Target:  5'- aCCGCCACCGCguaUGCCaccgcccgugcgcuGGGGCUGCgCGCUa -3'
miRNA:   3'- -GGUGGUGGUG---AUGG--------------UCUCGGCG-GCGG- -5'
7114 3' -59 NC_001895.1 + 7681 0.75 0.104263
Target:  5'- ---aCGCUACggGCgGGAGCUGCCGCCg -3'
miRNA:   3'- ggugGUGGUGa-UGgUCUCGGCGGCGG- -5'
7114 3' -59 NC_001895.1 + 8835 0.75 0.104263
Target:  5'- -aACCcCCGCcGCCGGAGCCGgucacCCGCCc -3'
miRNA:   3'- ggUGGuGGUGaUGGUCUCGGC-----GGCGG- -5'
7114 3' -59 NC_001895.1 + 1704 0.74 0.110347
Target:  5'- gCCAgUACCACgcauCCGGcGCUGUCGCCa -3'
miRNA:   3'- -GGUgGUGGUGau--GGUCuCGGCGGCGG- -5'
7114 3' -59 NC_001895.1 + 12210 0.73 0.127038
Target:  5'- cUCAUCACCGCU-UgAG-GUCGCCGCCg -3'
miRNA:   3'- -GGUGGUGGUGAuGgUCuCGGCGGCGG- -5'
7114 3' -59 NC_001895.1 + 4029 0.73 0.130646
Target:  5'- gUCACCGCCACcGCCGGuGGCUuuGCUGCg -3'
miRNA:   3'- -GGUGGUGGUGaUGGUC-UCGG--CGGCGg -5'
7114 3' -59 NC_001895.1 + 20718 0.72 0.154344
Target:  5'- gCCAgCGCCAUguucagcgugACCGGcGuuGCCGCCu -3'
miRNA:   3'- -GGUgGUGGUGa---------UGGUCuCggCGGCGG- -5'
7114 3' -59 NC_001895.1 + 12744 0.71 0.176999
Target:  5'- uUAUCACCACUGCCGGuGCaGCaaaGCUg -3'
miRNA:   3'- gGUGGUGGUGAUGGUCuCGgCGg--CGG- -5'
7114 3' -59 NC_001895.1 + 28919 0.71 0.181871
Target:  5'- ---aCACCAUUGCCGguauuGAGCguuCGCCGCCg -3'
miRNA:   3'- ggugGUGGUGAUGGU-----CUCG---GCGGCGG- -5'
7114 3' -59 NC_001895.1 + 5786 0.69 0.243685
Target:  5'- -aGCUgaaACCGaaGCCGGAGCCGCaGCCc -3'
miRNA:   3'- ggUGG---UGGUgaUGGUCUCGGCGgCGG- -5'
7114 3' -59 NC_001895.1 + 21994 0.69 0.243685
Target:  5'- -gACaCACUug-ACCAGA-CCGCCGCCa -3'
miRNA:   3'- ggUG-GUGGugaUGGUCUcGGCGGCGG- -5'
7114 3' -59 NC_001895.1 + 12832 0.69 0.254667
Target:  5'- uCCGCCuucccggcgcgguuGCCGCUGCCAGcuUUGCUGCa -3'
miRNA:   3'- -GGUGG--------------UGGUGAUGGUCucGGCGGCGg -5'
7114 3' -59 NC_001895.1 + 4655 0.69 0.26879
Target:  5'- aCGCCGCCGgUGCUucauugcGGuauuucugcagccAGCCGaCCGCCa -3'
miRNA:   3'- gGUGGUGGUgAUGG-------UC-------------UCGGC-GGCGG- -5'
7114 3' -59 NC_001895.1 + 21155 0.68 0.284256
Target:  5'- gCCAgCucaGCCGCUGCCGugcuGAuGaCUGCCGCCu -3'
miRNA:   3'- -GGUgG---UGGUGAUGGU----CU-C-GGCGGCGG- -5'
7114 3' -59 NC_001895.1 + 7680 0.68 0.291515
Target:  5'- aCCACCggcaACCACa--CAGAuaaCCGUCGCCa -3'
miRNA:   3'- -GGUGG----UGGUGaugGUCUc--GGCGGCGG- -5'
7114 3' -59 NC_001895.1 + 13581 0.68 0.298918
Target:  5'- -uGCCGCC-CUugUAGAcUCGUCGCCu -3'
miRNA:   3'- ggUGGUGGuGAugGUCUcGGCGGCGG- -5'
7114 3' -59 NC_001895.1 + 5977 0.68 0.306467
Target:  5'- uUCACCGUCACUgACCGGcguGCCGCC-CUg -3'
miRNA:   3'- -GGUGGUGGUGA-UGGUCu--CGGCGGcGG- -5'
7114 3' -59 NC_001895.1 + 11883 0.68 0.306467
Target:  5'- -gGCCgACCGCgugACCGuGcAGuCUGCCGCCa -3'
miRNA:   3'- ggUGG-UGGUGa--UGGU-C-UC-GGCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.