Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7114 | 3' | -59 | NC_001895.1 | + | 1306 | 0.66 | 0.389892 |
Target: 5'- cUCACCGCCGgUAUCAGcaCC-CCGCUg -3' miRNA: 3'- -GGUGGUGGUgAUGGUCucGGcGGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 1392 | 0.66 | 0.408268 |
Target: 5'- gCGCCACCuAUgagGCCAGccgcagcgaggaAGCCaGCCacGCCg -3' miRNA: 3'- gGUGGUGG-UGa--UGGUC------------UCGG-CGG--CGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 1704 | 0.74 | 0.110347 |
Target: 5'- gCCAgUACCACgcauCCGGcGCUGUCGCCa -3' miRNA: 3'- -GGUgGUGGUGau--GGUCuCGGCGGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 2910 | 0.67 | 0.321999 |
Target: 5'- gCACggaaaACCcCUGCCAGuacAGCagCGCCGCCu -3' miRNA: 3'- gGUGg----UGGuGAUGGUC---UCG--GCGGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 4029 | 0.73 | 0.130646 |
Target: 5'- gUCACCGCCACcGCCGGuGGCUuuGCUGCg -3' miRNA: 3'- -GGUGGUGGUGaUGGUC-UCGG--CGGCGg -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 4655 | 0.69 | 0.26879 |
Target: 5'- aCGCCGCCGgUGCUucauugcGGuauuucugcagccAGCCGaCCGCCa -3' miRNA: 3'- gGUGGUGGUgAUGG-------UC-------------UCGGC-GGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 5786 | 0.69 | 0.243685 |
Target: 5'- -aGCUgaaACCGaaGCCGGAGCCGCaGCCc -3' miRNA: 3'- ggUGG---UGGUgaUGGUCUCGGCGgCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 5905 | 0.76 | 0.076086 |
Target: 5'- gCGCC-CCGC-GCCAGGGCgGCaCGCCg -3' miRNA: 3'- gGUGGuGGUGaUGGUCUCGgCG-GCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 5977 | 0.68 | 0.306467 |
Target: 5'- uUCACCGUCACUgACCGGcguGCCGCC-CUg -3' miRNA: 3'- -GGUGGUGGUGA-UGGUCu--CGGCGGcGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 6495 | 0.67 | 0.329982 |
Target: 5'- gCGCCACCGC--CCAGcGCauaucCCGCCa -3' miRNA: 3'- gGUGGUGGUGauGGUCuCGgc---GGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 7680 | 0.68 | 0.291515 |
Target: 5'- aCCACCggcaACCACa--CAGAuaaCCGUCGCCa -3' miRNA: 3'- -GGUGG----UGGUGaugGUCUc--GGCGGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 7681 | 0.75 | 0.104263 |
Target: 5'- ---aCGCUACggGCgGGAGCUGCCGCCg -3' miRNA: 3'- ggugGUGGUGa-UGgUCUCGGCGGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 7826 | 1.12 | 0.000149 |
Target: 5'- gCCACCACCACUACCAGAGCCGCCGCCc -3' miRNA: 3'- -GGUGGUGGUGAUGGUCUCGGCGGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 8835 | 0.75 | 0.104263 |
Target: 5'- -aACCcCCGCcGCCGGAGCCGgucacCCGCCc -3' miRNA: 3'- ggUGGuGGUGaUGGUCUCGGC-----GGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 10489 | 0.66 | 0.408268 |
Target: 5'- uCCugCgcgaugggucaGCCACUgaaGCCAGucgguGCacauGCCGCCg -3' miRNA: 3'- -GGugG-----------UGGUGA---UGGUCu----CGg---CGGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 11883 | 0.68 | 0.306467 |
Target: 5'- -gGCCgACCGCgugACCGuGcAGuCUGCCGCCa -3' miRNA: 3'- ggUGG-UGGUGa--UGGU-C-UC-GGCGGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 12210 | 0.73 | 0.127038 |
Target: 5'- cUCAUCACCGCU-UgAG-GUCGCCGCCg -3' miRNA: 3'- -GGUGGUGGUGAuGgUCuCGGCGGCGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 12744 | 0.71 | 0.176999 |
Target: 5'- uUAUCACCACUGCCGGuGCaGCaaaGCUg -3' miRNA: 3'- gGUGGUGGUGAUGGUCuCGgCGg--CGG- -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 12832 | 0.69 | 0.254667 |
Target: 5'- uCCGCCuucccggcgcgguuGCCGCUGCCAGcuUUGCUGCa -3' miRNA: 3'- -GGUGG--------------UGGUGAUGGUCucGGCGGCGg -5' |
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7114 | 3' | -59 | NC_001895.1 | + | 13581 | 0.68 | 0.298918 |
Target: 5'- -uGCCGCC-CUugUAGAcUCGUCGCCu -3' miRNA: 3'- ggUGGUGGuGAugGUCUcGGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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