miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7122 3' -57.8 NC_001895.1 + 8281 0.66 0.4714
Target:  5'- cGCACaGCAUCaggcaggucaGCACCGuaccaGCGGCg -3'
miRNA:   3'- cCGUGcCGUAGg---------UGUGGCcaa--CGCCG- -5'
7122 3' -57.8 NC_001895.1 + 11566 0.66 0.461239
Target:  5'- cGGCACaGGCcagCAuCACCGcccgUGCGGCc -3'
miRNA:   3'- -CCGUG-CCGuagGU-GUGGCca--ACGCCG- -5'
7122 3' -57.8 NC_001895.1 + 12638 0.66 0.461239
Target:  5'- gGGaCAuuccCGGCuAUCUguuCGCCGGUggUGUGGCu -3'
miRNA:   3'- -CC-GU----GCCG-UAGGu--GUGGCCA--ACGCCG- -5'
7122 3' -57.8 NC_001895.1 + 20057 0.66 0.451196
Target:  5'- aGuCACGGCGagCUguGCACUGGUcuUGCGGa -3'
miRNA:   3'- cC-GUGCCGUa-GG--UGUGGCCA--ACGCCg -5'
7122 3' -57.8 NC_001895.1 + 5172 0.66 0.451196
Target:  5'- cGGCucuGCGGUcgCCuuaGCCGG-UGUGGa -3'
miRNA:   3'- -CCG---UGCCGuaGGug-UGGCCaACGCCg -5'
7122 3' -57.8 NC_001895.1 + 5911 0.66 0.441273
Target:  5'- cGCGCcagGGCGg-CACGCCGGUcagUGaCGGUg -3'
miRNA:   3'- cCGUG---CCGUagGUGUGGCCA---AC-GCCG- -5'
7122 3' -57.8 NC_001895.1 + 21256 0.66 0.431476
Target:  5'- cGCAgCGGUcaguuuGUCCAgCuuuCCGGUugagGCGGCa -3'
miRNA:   3'- cCGU-GCCG------UAGGU-Gu--GGCCAa---CGCCG- -5'
7122 3' -57.8 NC_001895.1 + 18299 0.66 0.431476
Target:  5'- cGCACgGGCGguggCAUACgCGGUgGCGGUg -3'
miRNA:   3'- cCGUG-CCGUag--GUGUG-GCCAaCGCCG- -5'
7122 3' -57.8 NC_001895.1 + 7871 0.66 0.431476
Target:  5'- aGCGCGGUaaaaAUCCAC-CCGGcaGCGaccaGCg -3'
miRNA:   3'- cCGUGCCG----UAGGUGuGGCCaaCGC----CG- -5'
7122 3' -57.8 NC_001895.1 + 21558 0.67 0.414166
Target:  5'- gGGCAgucuucacgacgguUGGCAgugcuguuaugaccgCCAUcggggcuauuagcugGCCGGUUGUGGCc -3'
miRNA:   3'- -CCGU--------------GCCGUa--------------GGUG---------------UGGCCAACGCCG- -5'
7122 3' -57.8 NC_001895.1 + 10824 0.67 0.412269
Target:  5'- uGCGCGGCAacauugaaCACACCG---GCGGUg -3'
miRNA:   3'- cCGUGCCGUag------GUGUGGCcaaCGCCG- -5'
7122 3' -57.8 NC_001895.1 + 18884 0.67 0.412269
Target:  5'- uGCGCGGCAUUgcCAUCGGUca-GGCu -3'
miRNA:   3'- cCGUGCCGUAGguGUGGCCAacgCCG- -5'
7122 3' -57.8 NC_001895.1 + 29024 0.67 0.411323
Target:  5'- aGGCGCGGUaagcgugauaaacAUCCccacauCACCcucUGCGGCg -3'
miRNA:   3'- -CCGUGCCG-------------UAGGu-----GUGGccaACGCCG- -5'
7122 3' -57.8 NC_001895.1 + 20887 0.67 0.406611
Target:  5'- aGGUGCGGCAUaggucagcgcaucgcUCAUGCCGucaaaaucgGCGGCg -3'
miRNA:   3'- -CCGUGCCGUA---------------GGUGUGGCcaa------CGCCG- -5'
7122 3' -57.8 NC_001895.1 + 6419 0.67 0.402866
Target:  5'- cGCACuGGCAUCCACACCGcGauaacGCu -3'
miRNA:   3'- cCGUG-CCGUAGGUGUGGC-CaacgcCG- -5'
7122 3' -57.8 NC_001895.1 + 6904 0.67 0.3936
Target:  5'- cGGCAuCGGC-UCCAUGCUGGguaucGcCGGUu -3'
miRNA:   3'- -CCGU-GCCGuAGGUGUGGCCaa---C-GCCG- -5'
7122 3' -57.8 NC_001895.1 + 6117 0.67 0.3936
Target:  5'- -uCAcCGGCucgUCGCcuGCCGGUUGCGGg -3'
miRNA:   3'- ccGU-GCCGua-GGUG--UGGCCAACGCCg -5'
7122 3' -57.8 NC_001895.1 + 7390 0.67 0.384474
Target:  5'- -uCugGGCGUCCcUGCCGGgUGcCGGUu -3'
miRNA:   3'- ccGugCCGUAGGuGUGGCCaAC-GCCG- -5'
7122 3' -57.8 NC_001895.1 + 1009 0.67 0.381763
Target:  5'- uGCACGGCAgcCCGCaggcuuuuugccagACCGGUaaagcugaccgGUGGCu -3'
miRNA:   3'- cCGUGCCGUa-GGUG--------------UGGCCAa----------CGCCG- -5'
7122 3' -57.8 NC_001895.1 + 1745 0.67 0.366646
Target:  5'- uGGUACuGGCA-CC--GCCGGUgGUGGCc -3'
miRNA:   3'- -CCGUG-CCGUaGGugUGGCCAaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.