miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7122 3' -57.8 NC_001895.1 + 6708 0.67 0.364022
Target:  5'- gGGCGCGGUcugaacgucgggcaGUUCgACGgCGGUgccgUGUGGCa -3'
miRNA:   3'- -CCGUGCCG--------------UAGG-UGUgGCCA----ACGCCG- -5'
7122 3' -57.8 NC_001895.1 + 4036 0.68 0.340991
Target:  5'- -uCAgGGCGUcaccgCCAcCGCCGGUggcuuugcUGCGGCg -3'
miRNA:   3'- ccGUgCCGUA-----GGU-GUGGCCA--------ACGCCG- -5'
7122 3' -57.8 NC_001895.1 + 5865 0.69 0.316659
Target:  5'- gGGCGCGGguggCCGCuuUGGgcUGCGGCu -3'
miRNA:   3'- -CCGUGCCgua-GGUGugGCCa-ACGCCG- -5'
7122 3' -57.8 NC_001895.1 + 18960 0.69 0.316659
Target:  5'- gGGUgaACGGCAg-CGCACCGGUagaccuCGGCc -3'
miRNA:   3'- -CCG--UGCCGUagGUGUGGCCAac----GCCG- -5'
7122 3' -57.8 NC_001895.1 + 12822 0.69 0.304226
Target:  5'- cGGCGCGGUugCCgcugccagcuuugcuGCACCGGcaGUGGUg -3'
miRNA:   3'- -CCGUGCCGuaGG---------------UGUGGCCaaCGCCG- -5'
7122 3' -57.8 NC_001895.1 + 28116 0.69 0.301177
Target:  5'- aGCAcCGGUAaaCAUcuuACCGGUgccUGCGGCa -3'
miRNA:   3'- cCGU-GCCGUagGUG---UGGCCA---ACGCCG- -5'
7122 3' -57.8 NC_001895.1 + 4133 0.7 0.265048
Target:  5'- --aACGGCAUCgACGCCGGUgaUGUGuCg -3'
miRNA:   3'- ccgUGCCGUAGgUGUGGCCA--ACGCcG- -5'
7122 3' -57.8 NC_001895.1 + 12010 0.7 0.245105
Target:  5'- -uCACGGCAca-GCACCGGcUGgGGCg -3'
miRNA:   3'- ccGUGCCGUaggUGUGGCCaACgCCG- -5'
7122 3' -57.8 NC_001895.1 + 7307 0.71 0.208963
Target:  5'- cGGCAgGGCAagCuguUugCGGUaaUGCGGCc -3'
miRNA:   3'- -CCGUgCCGUagGu--GugGCCA--ACGCCG- -5'
7122 3' -57.8 NC_001895.1 + 21713 0.73 0.172698
Target:  5'- gGGCugaaaGCGGCAUuuGCGCCGGUgGgGGa -3'
miRNA:   3'- -CCG-----UGCCGUAggUGUGGCCAaCgCCg -5'
7122 3' -57.8 NC_001895.1 + 1354 0.74 0.127001
Target:  5'- uGGCGCuGCGUCCGCuGCUGGUcauggucuUGCGGa -3'
miRNA:   3'- -CCGUGcCGUAGGUG-UGGCCA--------ACGCCg -5'
7122 3' -57.8 NC_001895.1 + 12771 0.82 0.038426
Target:  5'- uGGCAgCGGCAaCCGCGCCGGgaagGCGGa -3'
miRNA:   3'- -CCGU-GCCGUaGGUGUGGCCaa--CGCCg -5'
7122 3' -57.8 NC_001895.1 + 19123 1.14 0.000127
Target:  5'- cGGCACGGCAUCCACACCGGUUGCGGCg -3'
miRNA:   3'- -CCGUGCCGUAGGUGUGGCCAACGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.