miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7128 5' -43.2 NC_001895.1 + 1253 0.7 0.967329
Target:  5'- gGUGCUGAUAc-CGGCGguGAGUgGCUc -3'
miRNA:   3'- -CGCGACUAUauGUUGCguUUUAgUGG- -5'
7128 5' -43.2 NC_001895.1 + 2820 0.75 0.835005
Target:  5'- -gGCUGAUGgggGCAACGCu--GUC-CCa -3'
miRNA:   3'- cgCGACUAUa--UGUUGCGuuuUAGuGG- -5'
7128 5' -43.2 NC_001895.1 + 3391 0.74 0.854511
Target:  5'- gGCGCUGAaagGCAaauggGCGCuguuugcgAAAAUCACCc -3'
miRNA:   3'- -CGCGACUauaUGU-----UGCG--------UUUUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 4617 0.68 0.992981
Target:  5'- cGCGCgUGAUGa-----GCAAGGUCACUg -3'
miRNA:   3'- -CGCG-ACUAUauguugCGUUUUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 5314 0.7 0.970249
Target:  5'- uGCGCUGGUcUGCGGCGagcuua-ACCa -3'
miRNA:   3'- -CGCGACUAuAUGUUGCguuuuagUGG- -5'
7128 5' -43.2 NC_001895.1 + 5633 0.69 0.984841
Target:  5'- uGC-CUGAUgaaGUGC-GCGCAaagcugcacaAAAUCACCg -3'
miRNA:   3'- -CGcGACUA---UAUGuUGCGU----------UUUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 6395 0.69 0.98258
Target:  5'- aCGCUcAUAaaGCGACGCG--GUCGCCa -3'
miRNA:   3'- cGCGAcUAUa-UGUUGCGUuuUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 6856 0.69 0.986871
Target:  5'- uGCGCccGAUAaACAGaCGCGGGGugauagguUCACCa -3'
miRNA:   3'- -CGCGa-CUAUaUGUU-GCGUUUU--------AGUGG- -5'
7128 5' -43.2 NC_001895.1 + 6997 0.72 0.93289
Target:  5'- gGCGCUGA-----AugGCAAucucAAUCACCu -3'
miRNA:   3'- -CGCGACUauaugUugCGUU----UUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 7264 0.66 0.998491
Target:  5'- aGCuGCUGAUA-GCGAC-CGGAGgccguggauuuuUCACCg -3'
miRNA:   3'- -CG-CGACUAUaUGUUGcGUUUU------------AGUGG- -5'
7128 5' -43.2 NC_001895.1 + 7834 0.68 0.99408
Target:  5'- cGCGCUGAUuUAUcuUGUGGuGUCGCUg -3'
miRNA:   3'- -CGCGACUAuAUGuuGCGUUuUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 8007 0.71 0.959155
Target:  5'- uCGCUGG---ACAGgGCGAAcaacGUCGCCa -3'
miRNA:   3'- cGCGACUauaUGUUgCGUUU----UAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 8078 0.66 0.998792
Target:  5'- cUGCUGAccgcugGCGACGUugu-UCGCCc -3'
miRNA:   3'- cGCGACUaua---UGUUGCGuuuuAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 8298 0.71 0.949675
Target:  5'- gGCGCUGGUGcaacCGGCGCAcagcaucaggcAGGUCAgCa -3'
miRNA:   3'- -CGCGACUAUau--GUUGCGU-----------UUUAGUgG- -5'
7128 5' -43.2 NC_001895.1 + 11099 0.71 0.963401
Target:  5'- gGCGCuUGAguUGCAGauUAAAGUCGCCu -3'
miRNA:   3'- -CGCG-ACUauAUGUUgcGUUUUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 11728 0.73 0.912235
Target:  5'- aGUGCUGAcggGCGuguCGCGGAuauuucuGUCACCa -3'
miRNA:   3'- -CGCGACUauaUGUu--GCGUUU-------UAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 12431 0.68 0.99408
Target:  5'- uCGCgGAUA-ACGGCGCGuuuuGUCGCUu -3'
miRNA:   3'- cGCGaCUAUaUGUUGCGUuu--UAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 12587 0.67 0.995862
Target:  5'- uUGCUGAUGc-CAAaccUGCAAGccGUCACCu -3'
miRNA:   3'- cGCGACUAUauGUU---GCGUUU--UAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 12949 0.77 0.74729
Target:  5'- -gGCUGAUuuuguuCAGCGCAu-GUCGCCa -3'
miRNA:   3'- cgCGACUAuau---GUUGCGUuuUAGUGG- -5'
7128 5' -43.2 NC_001895.1 + 13153 0.75 0.824839
Target:  5'- aCGgUGAUG-GCGACGCAGGAUUACg -3'
miRNA:   3'- cGCgACUAUaUGUUGCGUUUUAGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.