Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7128 | 5' | -43.2 | NC_001895.1 | + | 20906 | 0.67 | 0.996572 |
Target: 5'- gGCGCUGc---AUGAUGCAaAAAUCACa -3' miRNA: 3'- -CGCGACuauaUGUUGCGU-UUUAGUGg -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 27613 | 0.69 | 0.986871 |
Target: 5'- uGCGCUGGUuUGCGAagaGUGuGAcgCGCCa -3' miRNA: 3'- -CGCGACUAuAUGUUg--CGU-UUuaGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 22820 | 0.68 | 0.988686 |
Target: 5'- aUGCUGAUGcuCGACaGCAGGgauAUUACCg -3' miRNA: 3'- cGCGACUAUauGUUG-CGUUU---UAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 4617 | 0.68 | 0.992981 |
Target: 5'- cGCGCgUGAUGa-----GCAAGGUCACUg -3' miRNA: 3'- -CGCG-ACUAUauguugCGUUUUAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 29340 | 0.68 | 0.992981 |
Target: 5'- gGUGCUGcgggGUAUAuCGCGAAAUaCAUCu -3' miRNA: 3'- -CGCGACua--UAUGUuGCGUUUUA-GUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 7834 | 0.68 | 0.99408 |
Target: 5'- cGCGCUGAUuUAUcuUGUGGuGUCGCUg -3' miRNA: 3'- -CGCGACUAuAUGuuGCGUUuUAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 22673 | 0.67 | 0.995785 |
Target: 5'- cGCGCUuuauggcgauaucGGUAaACAG-GCGGAAUCGCUc -3' miRNA: 3'- -CGCGA-------------CUAUaUGUUgCGUUUUAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 12587 | 0.67 | 0.995862 |
Target: 5'- uUGCUGAUGc-CAAaccUGCAAGccGUCACCu -3' miRNA: 3'- cGCGACUAUauGUU---GCGUUU--UAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 22777 | 0.67 | 0.995862 |
Target: 5'- uGCGCUGAcAUuuGAUGCAGgcAGUaCGCUg -3' miRNA: 3'- -CGCGACUaUAugUUGCGUU--UUA-GUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 5633 | 0.69 | 0.984841 |
Target: 5'- uGC-CUGAUgaaGUGC-GCGCAaagcugcacaAAAUCACCg -3' miRNA: 3'- -CGcGACUA---UAUGuUGCGU----------UUUAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 20834 | 0.69 | 0.984626 |
Target: 5'- uGCGCUGAccUAUGCcgcaccuGugGCAAAAaauGCCg -3' miRNA: 3'- -CGCGACU--AUAUG-------UugCGUUUUag-UGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 28501 | 0.7 | 0.967329 |
Target: 5'- uCGCUGuu-UACGgaugagGCGCAGGcUCACCu -3' miRNA: 3'- cGCGACuauAUGU------UGCGUUUuAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 2820 | 0.75 | 0.835005 |
Target: 5'- -gGCUGAUGgggGCAACGCu--GUC-CCa -3' miRNA: 3'- cgCGACUAUa--UGUUGCGuuuUAGuGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 3391 | 0.74 | 0.854511 |
Target: 5'- gGCGCUGAaagGCAaauggGCGCuguuugcgAAAAUCACCc -3' miRNA: 3'- -CGCGACUauaUGU-----UGCG--------UUUUAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 18263 | 0.74 | 0.872833 |
Target: 5'- uGCGCUGGg--GCuGCGCGcuaAAAUCgACCa -3' miRNA: 3'- -CGCGACUauaUGuUGCGU---UUUAG-UGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 11728 | 0.73 | 0.912235 |
Target: 5'- aGUGCUGAcggGCGuguCGCGGAuauuucuGUCACCa -3' miRNA: 3'- -CGCGACUauaUGUu--GCGUUU-------UAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 17775 | 0.72 | 0.925948 |
Target: 5'- uGUGCUGAUuaccaauGUGCAgaGCGCAAuuUCaaagGCCg -3' miRNA: 3'- -CGCGACUA-------UAUGU--UGCGUUuuAG----UGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 8007 | 0.71 | 0.959155 |
Target: 5'- uCGCUGG---ACAGgGCGAAcaacGUCGCCa -3' miRNA: 3'- cGCGACUauaUGUUgCGUUU----UAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 11099 | 0.71 | 0.963401 |
Target: 5'- gGCGCuUGAguUGCAGauUAAAGUCGCCu -3' miRNA: 3'- -CGCG-ACUauAUGUUgcGUUUUAGUGG- -5' |
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7128 | 5' | -43.2 | NC_001895.1 | + | 1253 | 0.7 | 0.967329 |
Target: 5'- gGUGCUGAUAc-CGGCGguGAGUgGCUc -3' miRNA: 3'- -CGCGACUAUauGUUGCguUUUAgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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