miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7163 3' -57.4 NC_001900.1 + 42912 0.66 0.576694
Target:  5'- aGGCUCCauuccuGGcGAUGUACGCCUGuagGUAc -3'
miRNA:   3'- -CCGGGG------CCaCUACAUGUGGACca-CGU- -5'
7163 3' -57.4 NC_001900.1 + 1226 0.66 0.533778
Target:  5'- aGGCaCCGGUGGUGUACucggUGGcgGCGg -3'
miRNA:   3'- -CCGgGGCCACUACAUGugg-ACCa-CGU- -5'
7163 3' -57.4 NC_001900.1 + 11057 0.66 0.533778
Target:  5'- cGCCaCCGGgcgcGAaacaUGCGCCUGGUGUc -3'
miRNA:   3'- cCGG-GGCCa---CUac--AUGUGGACCACGu -5'
7163 3' -57.4 NC_001900.1 + 27493 0.68 0.413594
Target:  5'- cGGCCgUCGGcGAUGUagcggcGCACCgucuUGGUGCu -3'
miRNA:   3'- -CCGG-GGCCaCUACA------UGUGG----ACCACGu -5'
7163 3' -57.4 NC_001900.1 + 21202 0.68 0.461768
Target:  5'- cGGCCCUGGUGA---ACAUC-GGUGgCGa -3'
miRNA:   3'- -CCGGGGCCACUacaUGUGGaCCAC-GU- -5'
7163 3' -57.4 NC_001900.1 + 28430 0.68 0.461768
Target:  5'- uGGCCUCcGUGGUGUgcgaccACugCUGGUacaGCAc -3'
miRNA:   3'- -CCGGGGcCACUACA------UGugGACCA---CGU- -5'
7163 3' -57.4 NC_001900.1 + 48983 0.69 0.404335
Target:  5'- uGGCuCCUGGUGGcucacaGCGCCUGG-GCGa -3'
miRNA:   3'- -CCG-GGGCCACUaca---UGUGGACCaCGU- -5'
7163 3' -57.4 NC_001900.1 + 3544 0.69 0.386216
Target:  5'- cGGCgCUCGGggccgGUAacgGCCUGGUGCAu -3'
miRNA:   3'- -CCG-GGGCCacua-CAUg--UGGACCACGU- -5'
7163 3' -57.4 NC_001900.1 + 27037 0.69 0.395209
Target:  5'- uGGCCCugagccgacaCGGUug-GUACGCCUGG-GCGc -3'
miRNA:   3'- -CCGGG----------GCCAcuaCAUGUGGACCaCGU- -5'
7163 3' -57.4 NC_001900.1 + 45660 1.1 0.000419
Target:  5'- uGGCCCCGGUGAUGUACACCUGGUGCAg -3'
miRNA:   3'- -CCGGGGCCACUACAUGUGGACCACGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.