miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7164 3' -62.2 NC_001900.1 + 24579 0.66 0.356298
Target:  5'- cACCGGGUCGaacGCUGGCCacaccuggucguugCCGAG-GCu -3'
miRNA:   3'- -UGGUCCGGCaa-UGGCCGG--------------GGCUCgCG- -5'
7164 3' -62.2 NC_001900.1 + 36486 0.66 0.327029
Target:  5'- gGCuCAGGCCGUU-CaCGGCCaCCuGGuCGUa -3'
miRNA:   3'- -UG-GUCCGGCAAuG-GCCGG-GGcUC-GCG- -5'
7164 3' -62.2 NC_001900.1 + 37513 0.67 0.319431
Target:  5'- cACCgGGGUCGggucGCCGG-CCgGAGUGCc -3'
miRNA:   3'- -UGG-UCCGGCaa--UGGCCgGGgCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 44298 0.67 0.311966
Target:  5'- cGCCccGCCGUaGCCGuaccuguuGCCagcgCGAGCGCg -3'
miRNA:   3'- -UGGucCGGCAaUGGC--------CGGg---GCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 25219 0.67 0.297435
Target:  5'- gGCCuGGCC-UUcCCaGCCCC-AGCGCc -3'
miRNA:   3'- -UGGuCCGGcAAuGGcCGGGGcUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 5977 0.68 0.276632
Target:  5'- gGCCAGGCCGcagcgGCUGaUCCUGGGCa- -3'
miRNA:   3'- -UGGUCCGGCaa---UGGCcGGGGCUCGcg -5'
7164 3' -62.2 NC_001900.1 + 47223 0.68 0.269961
Target:  5'- gGCCgAGGCCGUcacCCGGCUuuCCGGGgaacaCGCu -3'
miRNA:   3'- -UGG-UCCGGCAau-GGCCGG--GGCUC-----GCG- -5'
7164 3' -62.2 NC_001900.1 + 47853 0.68 0.250724
Target:  5'- cACCGGuGCCugcGUUGCCGgugccuaaaccGCCCCGGcCGCu -3'
miRNA:   3'- -UGGUC-CGG---CAAUGGC-----------CGGGGCUcGCG- -5'
7164 3' -62.2 NC_001900.1 + 16818 0.68 0.244568
Target:  5'- cGCCGauGGUCGUcACgGGCaaccaCCGGGCGUg -3'
miRNA:   3'- -UGGU--CCGGCAaUGgCCGg----GGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 20349 0.69 0.232632
Target:  5'- gACCGGGCCGUcuucuucgaCGGCCagGAGCuGCc -3'
miRNA:   3'- -UGGUCCGGCAaug------GCCGGggCUCG-CG- -5'
7164 3' -62.2 NC_001900.1 + 43318 0.71 0.17098
Target:  5'- gGCCAGGuuG-UACCGGCgUCG-GCGg -3'
miRNA:   3'- -UGGUCCggCaAUGGCCGgGGCuCGCg -5'
7164 3' -62.2 NC_001900.1 + 21596 0.71 0.166561
Target:  5'- gGCUcaAGGCCGUgcgGCuCGGCCCCaGGCu- -3'
miRNA:   3'- -UGG--UCCGGCAa--UG-GCCGGGGcUCGcg -5'
7164 3' -62.2 NC_001900.1 + 11798 0.71 0.149896
Target:  5'- -gCGGGCCGUguacgaCGGCCCUGucGGCGUc -3'
miRNA:   3'- ugGUCCGGCAaug---GCCGGGGC--UCGCG- -5'
7164 3' -62.2 NC_001900.1 + 3390 0.75 0.080398
Target:  5'- gUgAGGCCG--GCCGGCCgUGAGCGUg -3'
miRNA:   3'- uGgUCCGGCaaUGGCCGGgGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 45517 1.09 0.000189
Target:  5'- cACCAGGCCGUUACCGGCCCCGAGCGCc -3'
miRNA:   3'- -UGGUCCGGCAAUGGCCGGGGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 4547 0.66 0.35875
Target:  5'- gUCAGGuCCGUacaaCGGCCagcgagacaUCGAGCGCc -3'
miRNA:   3'- uGGUCC-GGCAaug-GCCGG---------GGCUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.