miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7164 3' -62.2 NC_001900.1 + 30526 0.67 0.319431
Target:  5'- uCCGGGCCGUgaagACCGuGUCCauccccGCGUa -3'
miRNA:   3'- uGGUCCGGCAa---UGGC-CGGGgcu---CGCG- -5'
7164 3' -62.2 NC_001900.1 + 32535 0.68 0.250724
Target:  5'- gUCAGGaCCGaccgGCUGGCCUCGAuguagaacgucGCGCu -3'
miRNA:   3'- uGGUCC-GGCaa--UGGCCGGGGCU-----------CGCG- -5'
7164 3' -62.2 NC_001900.1 + 32825 0.75 0.078211
Target:  5'- gGCCAGucGUCGUUGCUGGCCCCcGGUGg -3'
miRNA:   3'- -UGGUC--CGGCAAUGGCCGGGGcUCGCg -5'
7164 3' -62.2 NC_001900.1 + 36486 0.66 0.327029
Target:  5'- gGCuCAGGCCGUU-CaCGGCCaCCuGGuCGUa -3'
miRNA:   3'- -UG-GUCCGGCAAuG-GCCGG-GGcUC-GCG- -5'
7164 3' -62.2 NC_001900.1 + 37263 0.68 0.26342
Target:  5'- cGCCgacaGGGCCGUcgUACaCGGCCCgcAGCGg -3'
miRNA:   3'- -UGG----UCCGGCA--AUG-GCCGGGgcUCGCg -5'
7164 3' -62.2 NC_001900.1 + 37513 0.67 0.319431
Target:  5'- cACCgGGGUCGggucGCCGG-CCgGAGUGCc -3'
miRNA:   3'- -UGG-UCCGGCaa--UGGCCgGGgCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 40316 0.7 0.175503
Target:  5'- aGCCGcugcGGCCGUgGuuGGCCgcgUCGAGUGCg -3'
miRNA:   3'- -UGGU----CCGGCAaUggCCGG---GGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 42773 0.66 0.35875
Target:  5'- cACCAGGUCG-UGCCaGGCguccagCCCGA-CGUg -3'
miRNA:   3'- -UGGUCCGGCaAUGG-CCG------GGGCUcGCG- -5'
7164 3' -62.2 NC_001900.1 + 43318 0.71 0.17098
Target:  5'- gGCCAGGuuG-UACCGGCgUCG-GCGg -3'
miRNA:   3'- -UGGUCCggCaAUGGCCGgGGCuCGCg -5'
7164 3' -62.2 NC_001900.1 + 44298 0.67 0.311966
Target:  5'- cGCCccGCCGUaGCCGuaccuguuGCCagcgCGAGCGCg -3'
miRNA:   3'- -UGGucCGGCAaUGGC--------CGGg---GCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 44486 0.71 0.17098
Target:  5'- uCCAGGCCGacggugUACCGGCgCUCGAugucuCGCu -3'
miRNA:   3'- uGGUCCGGCa-----AUGGCCG-GGGCUc----GCG- -5'
7164 3' -62.2 NC_001900.1 + 44708 0.72 0.130853
Target:  5'- aGCCAGGCCGcugGCCGcuGCCacaccuugucgauCCGAGCGa -3'
miRNA:   3'- -UGGUCCGGCaa-UGGC--CGG-------------GGCUCGCg -5'
7164 3' -62.2 NC_001900.1 + 45517 1.09 0.000189
Target:  5'- cACCAGGCCGUUACCGGCCCCGAGCGCc -3'
miRNA:   3'- -UGGUCCGGCAAUGGCCGGGGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 46152 0.69 0.210232
Target:  5'- gACCAGGCCGUUGCgCGaagcggcaGCUUCGAG-GUg -3'
miRNA:   3'- -UGGUCCGGCAAUG-GC--------CGGGGCUCgCG- -5'
7164 3' -62.2 NC_001900.1 + 47223 0.68 0.269961
Target:  5'- gGCCgAGGCCGUcacCCGGCUuuCCGGGgaacaCGCu -3'
miRNA:   3'- -UGG-UCCGGCAau-GGCCGG--GGCUC-----GCG- -5'
7164 3' -62.2 NC_001900.1 + 47853 0.68 0.250724
Target:  5'- cACCGGuGCCugcGUUGCCGgugccuaaaccGCCCCGGcCGCu -3'
miRNA:   3'- -UGGUC-CGG---CAAUGGC-----------CGGGGCUcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.