miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7164 3' -62.2 NC_001900.1 + 2432 0.67 0.317927
Target:  5'- uGCCGgguGGCUGUgugaggucgaCGGCCCCGGcuGCGUc -3'
miRNA:   3'- -UGGU---CCGGCAaug-------GCCGGGGCU--CGCG- -5'
7164 3' -62.2 NC_001900.1 + 3390 0.75 0.080398
Target:  5'- gUgAGGCCG--GCCGGCCgUGAGCGUg -3'
miRNA:   3'- uGgUCCGGCaaUGGCCGGgGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 4175 0.68 0.269961
Target:  5'- cUCGGcGUCGUcUACCGGCaacCCCGguaGGCGCa -3'
miRNA:   3'- uGGUC-CGGCA-AUGGCCG---GGGC---UCGCG- -5'
7164 3' -62.2 NC_001900.1 + 4547 0.66 0.35875
Target:  5'- gUCAGGuCCGUacaaCGGCCagcgagacaUCGAGCGCc -3'
miRNA:   3'- uGGUCC-GGCAaug-GCCGG---------GGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 5630 0.68 0.269961
Target:  5'- cAUCGGuGCCGccuggUACUGGaCCgUCGAGCGCc -3'
miRNA:   3'- -UGGUC-CGGCa----AUGGCC-GG-GGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 5977 0.68 0.276632
Target:  5'- gGCCAGGCCGcagcgGCUGaUCCUGGGCa- -3'
miRNA:   3'- -UGGUCCGGCaa---UGGCcGGGGCUCGcg -5'
7164 3' -62.2 NC_001900.1 + 7804 0.69 0.215652
Target:  5'- gUCAGGCgauCGgcaaGCCGcGCCCCGcAGCGUg -3'
miRNA:   3'- uGGUCCG---GCaa--UGGC-CGGGGC-UCGCG- -5'
7164 3' -62.2 NC_001900.1 + 9386 0.66 0.35875
Target:  5'- -aCAGGCUGUcgaggguuuCCGGCUCgGGGaCGCc -3'
miRNA:   3'- ugGUCCGGCAau-------GGCCGGGgCUC-GCG- -5'
7164 3' -62.2 NC_001900.1 + 11798 0.71 0.149896
Target:  5'- -gCGGGCCGUguacgaCGGCCCUGucGGCGUc -3'
miRNA:   3'- ugGUCCGGCAaug---GCCGGGGC--UCGCG- -5'
7164 3' -62.2 NC_001900.1 + 13055 0.68 0.238538
Target:  5'- cACCgggaggGGGCCGUUcACgCGGCCCCuuccugGGGUGUc -3'
miRNA:   3'- -UGG------UCCGGCAA-UG-GCCGGGG------CUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 16818 0.68 0.244568
Target:  5'- cGCCGauGGUCGUcACgGGCaaccaCCGGGCGUg -3'
miRNA:   3'- -UGGU--CCGGCAaUGgCCGg----GGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 18664 0.67 0.319431
Target:  5'- gGCC-GGCCGUg--CGGCgCUGcaGGCGCa -3'
miRNA:   3'- -UGGuCCGGCAaugGCCGgGGC--UCGCG- -5'
7164 3' -62.2 NC_001900.1 + 20349 0.69 0.232632
Target:  5'- gACCGGGCCGUcuucuucgaCGGCCagGAGCuGCc -3'
miRNA:   3'- -UGGUCCGGCAaug------GCCGGggCUCG-CG- -5'
7164 3' -62.2 NC_001900.1 + 21596 0.71 0.166561
Target:  5'- gGCUcaAGGCCGUgcgGCuCGGCCCCaGGCu- -3'
miRNA:   3'- -UGG--UCCGGCAa--UG-GCCGGGGcUCGcg -5'
7164 3' -62.2 NC_001900.1 + 24579 0.66 0.356298
Target:  5'- cACCGGGUCGaacGCUGGCCacaccuggucguugCCGAG-GCu -3'
miRNA:   3'- -UGGUCCGGCaa-UGGCCGG--------------GGCUCgCG- -5'
7164 3' -62.2 NC_001900.1 + 25219 0.67 0.297435
Target:  5'- gGCCuGGCC-UUcCCaGCCCC-AGCGCc -3'
miRNA:   3'- -UGGuCCGGcAAuGGcCGGGGcUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 25740 0.67 0.304634
Target:  5'- uUCucGCCGacgcggGCCGcGCCCCG-GCGCa -3'
miRNA:   3'- uGGucCGGCaa----UGGC-CGGGGCuCGCG- -5'
7164 3' -62.2 NC_001900.1 + 27463 0.68 0.276632
Target:  5'- aGCCugGGGCCGagccGCaCGGCCuuGAGCcgGCc -3'
miRNA:   3'- -UGG--UCCGGCaa--UG-GCCGGggCUCG--CG- -5'
7164 3' -62.2 NC_001900.1 + 28009 0.69 0.215652
Target:  5'- gAUCAcGCCGUUcggGCCGGUguaaCCGGGUGCg -3'
miRNA:   3'- -UGGUcCGGCAA---UGGCCGg---GGCUCGCG- -5'
7164 3' -62.2 NC_001900.1 + 28057 0.69 0.22685
Target:  5'- -aCAGGCCGUga--GGCCCaGGGCGa -3'
miRNA:   3'- ugGUCCGGCAauggCCGGGgCUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.