miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7166 3' -61.3 NC_001900.1 + 33093 0.66 0.36732
Target:  5'- uCCUcGUCCAGCGCGGCgau--CAGCUu -3'
miRNA:   3'- cGGA-CGGGUCGCGUCGaggcuGUCGA- -5'
7166 3' -61.3 NC_001900.1 + 17088 0.66 0.358879
Target:  5'- gGCCUcacCCCGGUcuuccaGCAGCUCgGugGGUUg -3'
miRNA:   3'- -CGGAc--GGGUCG------CGUCGAGgCugUCGA- -5'
7166 3' -61.3 NC_001900.1 + 23134 0.66 0.342409
Target:  5'- cCCUGaCCgGGCGCAGC-CCG--GGCg -3'
miRNA:   3'- cGGAC-GGgUCGCGUCGaGGCugUCGa -5'
7166 3' -61.3 NC_001900.1 + 46954 0.66 0.334381
Target:  5'- cGCgCUGaaguaCAGCGaCAGgUUCGACAGCUu -3'
miRNA:   3'- -CG-GACgg---GUCGC-GUCgAGGCUGUCGA- -5'
7166 3' -61.3 NC_001900.1 + 40660 0.66 0.332
Target:  5'- uGCCgUGCCacucccaguccgcaCGGUGCAGCUCCGG-GGUg -3'
miRNA:   3'- -CGG-ACGG--------------GUCGCGUCGAGGCUgUCGa -5'
7166 3' -61.3 NC_001900.1 + 30474 0.66 0.326491
Target:  5'- uCCUGCuCCAGCGCAGCcgaGuACuGCUu -3'
miRNA:   3'- cGGACG-GGUCGCGUCGaggC-UGuCGA- -5'
7166 3' -61.3 NC_001900.1 + 32100 0.66 0.334381
Target:  5'- aCCgGCuCCAGCGCcgaacgcugacAGCagCGACGGCa -3'
miRNA:   3'- cGGaCG-GGUCGCG-----------UCGagGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 21025 0.66 0.36732
Target:  5'- gGCCUGUgaCGGUgGCGGCUCCGcaccCGGUUa -3'
miRNA:   3'- -CGGACGg-GUCG-CGUCGAGGCu---GUCGA- -5'
7166 3' -61.3 NC_001900.1 + 26443 0.66 0.36732
Target:  5'- aUCUGCUCGGUGUAGUcCUGGCcgaAGCUg -3'
miRNA:   3'- cGGACGGGUCGCGUCGaGGCUG---UCGA- -5'
7166 3' -61.3 NC_001900.1 + 31306 0.66 0.355541
Target:  5'- cGCCUGCagcgcagugguaAGCGCAGUgCCGAgGGUc -3'
miRNA:   3'- -CGGACGgg----------UCGCGUCGaGGCUgUCGa -5'
7166 3' -61.3 NC_001900.1 + 23315 0.66 0.342409
Target:  5'- cGCgUGCgCCggGGCGCGGC-CCGcguCGGCg -3'
miRNA:   3'- -CGgACG-GG--UCGCGUCGaGGCu--GUCGa -5'
7166 3' -61.3 NC_001900.1 + 33272 0.67 0.288415
Target:  5'- gGCCUucugGCCCAGCuucagcaGCGGCUucagcUCGACGGUc -3'
miRNA:   3'- -CGGA----CGGGUCG-------CGUCGA-----GGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 34670 0.67 0.311129
Target:  5'- aGUCcGCCCAGUGCAucaucgccauGCgagCCGACcGGCg -3'
miRNA:   3'- -CGGaCGGGUCGCGU----------CGa--GGCUG-UCGa -5'
7166 3' -61.3 NC_001900.1 + 6314 0.67 0.289127
Target:  5'- aCCUGgUCGGCGCAGCcgcaCCGGCcacGGCc -3'
miRNA:   3'- cGGACgGGUCGCGUCGa---GGCUG---UCGa -5'
7166 3' -61.3 NC_001900.1 + 47859 0.67 0.28207
Target:  5'- uGCCUGCguugCCGGUGCcuaaaccgccccGGCcgcuUCCGGCGGCc -3'
miRNA:   3'- -CGGACG----GGUCGCG------------UCG----AGGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 22135 0.67 0.288415
Target:  5'- aGCUcGCUCAGCGCggugaaacugaGGCUgaaggccagaccgCCGACGGCg -3'
miRNA:   3'- -CGGaCGGGUCGCG-----------UCGA-------------GGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 32408 0.68 0.255204
Target:  5'- gGCCUugUCGGCGUcggAGC-CCGACAGCUc -3'
miRNA:   3'- -CGGAcgGGUCGCG---UCGaGGCUGUCGA- -5'
7166 3' -61.3 NC_001900.1 + 42744 0.68 0.248824
Target:  5'- gGCCgUGgCCGGUGCGGCUgcgCCGACcaGGUUg -3'
miRNA:   3'- -CGG-ACgGGUCGCGUCGA---GGCUG--UCGA- -5'
7166 3' -61.3 NC_001900.1 + 25898 0.68 0.261717
Target:  5'- aUCUGCUCGGC-CGGCUCaaCGACGGUc -3'
miRNA:   3'- cGGACGGGUCGcGUCGAG--GCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 48710 0.68 0.275149
Target:  5'- aGCCgcGCUUcaGGCGCGGCgcuagaUCCGGCGGUUg -3'
miRNA:   3'- -CGGa-CGGG--UCGCGUCG------AGGCUGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.