miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7166 3' -61.3 NC_001900.1 + 43458 1.08 0.000221
Target:  5'- uGCCUGCCCAGCGCAGCUCCGACAGCUc -3'
miRNA:   3'- -CGGACGGGUCGCGUCGAGGCUGUCGA- -5'
7166 3' -61.3 NC_001900.1 + 25472 0.76 0.073448
Target:  5'- gGCCUGagccgCCAGCGUGGCUCCcACGGCc -3'
miRNA:   3'- -CGGACg----GGUCGCGUCGAGGcUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 22660 0.72 0.124799
Target:  5'- cGCUgcgGaCCCAGCGCAGCggUCGAguGCa -3'
miRNA:   3'- -CGGa--C-GGGUCGCGUCGa-GGCUguCGa -5'
7166 3' -61.3 NC_001900.1 + 25219 0.7 0.182182
Target:  5'- gGCCUGgccuucccagcCCCAGCGCcggaagccAGCgCCGAUAGCc -3'
miRNA:   3'- -CGGAC-----------GGGUCGCG--------UCGaGGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 2567 0.69 0.207795
Target:  5'- aGCC-GCUgagGGCGUAGC-CCGACGGCg -3'
miRNA:   3'- -CGGaCGGg--UCGCGUCGaGGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 882 0.69 0.213277
Target:  5'- gGCCgcaGCCCGacccaacauucGCGaauGGCUUCGACAGCa -3'
miRNA:   3'- -CGGa--CGGGU-----------CGCg--UCGAGGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 42744 0.68 0.248824
Target:  5'- gGCCgUGgCCGGUGCGGCUgcgCCGACcaGGUUg -3'
miRNA:   3'- -CGG-ACgGGUCGCGUCGA---GGCUG--UCGA- -5'
7166 3' -61.3 NC_001900.1 + 32408 0.68 0.255204
Target:  5'- gGCCUugUCGGCGUcggAGC-CCGACAGCUc -3'
miRNA:   3'- -CGGAcgGGUCGCG---UCGaGGCUGUCGA- -5'
7166 3' -61.3 NC_001900.1 + 25898 0.68 0.261717
Target:  5'- aUCUGCUCGGC-CGGCUCaaCGACGGUc -3'
miRNA:   3'- cGGACGGGUCGcGUCGAG--GCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 48710 0.68 0.275149
Target:  5'- aGCCgcGCUUcaGGCGCGGCgcuagaUCCGGCGGUUg -3'
miRNA:   3'- -CGGa-CGGG--UCGCGUCG------AGGCUGUCGA- -5'
7166 3' -61.3 NC_001900.1 + 47859 0.67 0.28207
Target:  5'- uGCCUGCguugCCGGUGCcuaaaccgccccGGCcgcuUCCGGCGGCc -3'
miRNA:   3'- -CGGACG----GGUCGCG------------UCG----AGGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 22135 0.67 0.288415
Target:  5'- aGCUcGCUCAGCGCggugaaacugaGGCUgaaggccagaccgCCGACGGCg -3'
miRNA:   3'- -CGGaCGGGUCGCG-----------UCGA-------------GGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 33272 0.67 0.288415
Target:  5'- gGCCUucugGCCCAGCuucagcaGCGGCUucagcUCGACGGUc -3'
miRNA:   3'- -CGGA----CGGGUCG-------CGUCGA-----GGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 6314 0.67 0.289127
Target:  5'- aCCUGgUCGGCGCAGCcgcaCCGGCcacGGCc -3'
miRNA:   3'- cGGACgGGUCGCGUCGa---GGCUG---UCGa -5'
7166 3' -61.3 NC_001900.1 + 34670 0.67 0.311129
Target:  5'- aGUCcGCCCAGUGCAucaucgccauGCgagCCGACcGGCg -3'
miRNA:   3'- -CGGaCGGGUCGCGU----------CGa--GGCUG-UCGa -5'
7166 3' -61.3 NC_001900.1 + 30474 0.66 0.326491
Target:  5'- uCCUGCuCCAGCGCAGCcgaGuACuGCUu -3'
miRNA:   3'- cGGACG-GGUCGCGUCGaggC-UGuCGA- -5'
7166 3' -61.3 NC_001900.1 + 40660 0.66 0.332
Target:  5'- uGCCgUGCCacucccaguccgcaCGGUGCAGCUCCGG-GGUg -3'
miRNA:   3'- -CGG-ACGG--------------GUCGCGUCGAGGCUgUCGa -5'
7166 3' -61.3 NC_001900.1 + 32100 0.66 0.334381
Target:  5'- aCCgGCuCCAGCGCcgaacgcugacAGCagCGACGGCa -3'
miRNA:   3'- cGGaCG-GGUCGCG-----------UCGagGCUGUCGa -5'
7166 3' -61.3 NC_001900.1 + 46954 0.66 0.334381
Target:  5'- cGCgCUGaaguaCAGCGaCAGgUUCGACAGCUu -3'
miRNA:   3'- -CG-GACgg---GUCGC-GUCgAGGCUGUCGA- -5'
7166 3' -61.3 NC_001900.1 + 23315 0.66 0.342409
Target:  5'- cGCgUGCgCCggGGCGCGGC-CCGcguCGGCg -3'
miRNA:   3'- -CGgACG-GG--UCGCGUCGaGGCu--GUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.