miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7166 3' -61.3 NC_001900.1 + 23134 0.66 0.342409
Target:  5'- cCCUGaCCgGGCGCAGC-CCG--GGCg -3'
miRNA:   3'- cGGAC-GGgUCGCGUCGaGGCugUCGa -5'
7166 3' -61.3 NC_001900.1 + 31306 0.66 0.355541
Target:  5'- cGCCUGCagcgcagugguaAGCGCAGUgCCGAgGGUc -3'
miRNA:   3'- -CGGACGgg----------UCGCGUCGaGGCUgUCGa -5'
7166 3' -61.3 NC_001900.1 + 17088 0.66 0.358879
Target:  5'- gGCCUcacCCCGGUcuuccaGCAGCUCgGugGGUUg -3'
miRNA:   3'- -CGGAc--GGGUCG------CGUCGAGgCugUCGA- -5'
7166 3' -61.3 NC_001900.1 + 26443 0.66 0.36732
Target:  5'- aUCUGCUCGGUGUAGUcCUGGCcgaAGCUg -3'
miRNA:   3'- cGGACGGGUCGCGUCGaGGCUG---UCGA- -5'
7166 3' -61.3 NC_001900.1 + 33093 0.66 0.36732
Target:  5'- uCCUcGUCCAGCGCGGCgau--CAGCUu -3'
miRNA:   3'- cGGA-CGGGUCGCGUCGaggcuGUCGA- -5'
7166 3' -61.3 NC_001900.1 + 21025 0.66 0.36732
Target:  5'- gGCCUGUgaCGGUgGCGGCUCCGcaccCGGUUa -3'
miRNA:   3'- -CGGACGg-GUCG-CGUCGAGGCu---GUCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.