miRNA: 3'- caAGGAcG-GCUGGUGGCUUCGGGACc -5'
miRNA: 3'- caaGGACGGCu----GGUGGCU----UCGGGaCC- -5'
miRNA: 3'- caaGGACGGCuGG----UGGCUUCGGGacc -5'
miRNA: 3'- -CAAGGACGGCUG-GugGCU---UCGGGacc -5'
miRNA: 3'- caAGgaC-GGCUgGUGGCUUCGGG------ACC- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7176 | 3' | -57.9 | NC_001900.1 | + | 3154 | 0.68 | 0.421858 |
|
Target: 5'- -aUCCU-CgCGGCCAUCGAAGUCUUGa -3' miRNA: 3'- caAGGAcG-GCUGGUGGCUUCGGGACc -5' |
|||||||
| 7176 | 3' | -57.9 | NC_001900.1 | + | 43527 | 0.68 | 0.421858 |
|
Target: 5'- --cCCUGCCGugagcCCACCGGgagaAGUCCcGGu -3' miRNA: 3'- caaGGACGGCu----GGUGGCU----UCGGGaCC- -5' |
|||||||
| 7176 | 3' | -57.9 | NC_001900.1 | + | 3984 | 0.68 | 0.412551 |
|
Target: 5'- --cCCUGCUG-CCgcguACCGGAGCCCg-- -3' miRNA: 3'- caaGGACGGCuGG----UGGCUUCGGGacc -5' |
|||||||
| 7176 | 3' | -57.9 | NC_001900.1 | + | 46703 | 0.68 | 0.412551 |
|
Target: 5'- aGUUCUUGCCGACgCuuCGAgccGGCCCa-- -3' miRNA: 3'- -CAAGGACGGCUG-GugGCU---UCGGGacc -5' |
|||||||
| 7176 | 3' | -57.9 | NC_001900.1 | + | 7463 | 0.66 | 0.563541 |
|
Target: 5'- -aUCgaGcCCGA-CACCGGAGCCCagaagcUGGa -3' miRNA: 3'- caAGgaC-GGCUgGUGGCUUCGGG------ACC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home