miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7182 5' -55 NC_001900.1 + 14004 0.66 0.7088
Target:  5'- gGCCGAGGCGgGucaguUGUCgaGCCG-CUaCGAc -3'
miRNA:   3'- -CGGUUCCGCgU-----ACAG--CGGCaGAaGCU- -5'
7182 5' -55 NC_001900.1 + 34870 0.66 0.708799
Target:  5'- gGCCcaGAGGC-CGUGcCGCCGaacgUCUUCa- -3'
miRNA:   3'- -CGG--UUCCGcGUACaGCGGC----AGAAGcu -5'
7182 5' -55 NC_001900.1 + 2011 0.66 0.697932
Target:  5'- aGCguGGGCGCGUGUCauCCGagaCUUCa- -3'
miRNA:   3'- -CGguUCCGCGUACAGc-GGCa--GAAGcu -5'
7182 5' -55 NC_001900.1 + 28280 0.66 0.697932
Target:  5'- gGUCAucgaacGGGUGCggGUCGCgGUCcUUGAu -3'
miRNA:   3'- -CGGU------UCCGCGuaCAGCGgCAGaAGCU- -5'
7182 5' -55 NC_001900.1 + 45613 0.66 0.686999
Target:  5'- gGCCGGGGUGUcgGU-GCCGUUgaggUUCa- -3'
miRNA:   3'- -CGGUUCCGCGuaCAgCGGCAG----AAGcu -5'
7182 5' -55 NC_001900.1 + 11241 0.66 0.676013
Target:  5'- -gCAGGGUGCGacugccUGguggUGCCuGUCUUCGAc -3'
miRNA:   3'- cgGUUCCGCGU------ACa---GCGG-CAGAAGCU- -5'
7182 5' -55 NC_001900.1 + 34776 0.67 0.650603
Target:  5'- gGCCAGguugguucgagcacGGCGgGUGaCGCCGUC-UCGc -3'
miRNA:   3'- -CGGUU--------------CCGCgUACaGCGGCAGaAGCu -5'
7182 5' -55 NC_001900.1 + 9596 0.68 0.598528
Target:  5'- cCCGAcGCGCAUGUaCGCCGagaUCGAu -3'
miRNA:   3'- cGGUUcCGCGUACA-GCGGCagaAGCU- -5'
7182 5' -55 NC_001900.1 + 12985 0.68 0.598528
Target:  5'- cGCCGAGGCGUucGUCGCUcugaccaacgugGUCagCGGc -3'
miRNA:   3'- -CGGUUCCGCGuaCAGCGG------------CAGaaGCU- -5'
7182 5' -55 NC_001900.1 + 38813 0.68 0.587498
Target:  5'- gGCC-AGGCGCA--UCGCC-UCUUCc- -3'
miRNA:   3'- -CGGuUCCGCGUacAGCGGcAGAAGcu -5'
7182 5' -55 NC_001900.1 + 15431 0.68 0.576506
Target:  5'- cGCCuacgAGGGCGUggAUGUCGCCGccgaUCUgcaGAg -3'
miRNA:   3'- -CGG----UUCCGCG--UACAGCGGC----AGAag-CU- -5'
7182 5' -55 NC_001900.1 + 40001 0.68 0.554668
Target:  5'- cGCCGguaucucgcAGGUGCAUGgccucguaGCCGUCgcCGAc -3'
miRNA:   3'- -CGGU---------UCCGCGUACag------CGGCAGaaGCU- -5'
7182 5' -55 NC_001900.1 + 19816 0.69 0.533082
Target:  5'- aGCCAAGaGgGUGgcucGUCGCCGUCggaugaccUUCGAc -3'
miRNA:   3'- -CGGUUC-CgCGUa---CAGCGGCAG--------AAGCU- -5'
7182 5' -55 NC_001900.1 + 23321 0.7 0.480572
Target:  5'- cGCCGGGGCGCGgccCGC-GUCggCGAg -3'
miRNA:   3'- -CGGUUCCGCGUacaGCGgCAGaaGCU- -5'
7182 5' -55 NC_001900.1 + 43919 0.74 0.293739
Target:  5'- uCC-AGGCGCGUG-CGCCGUCguaGAg -3'
miRNA:   3'- cGGuUCCGCGUACaGCGGCAGaagCU- -5'
7182 5' -55 NC_001900.1 + 33681 1.11 0.000741
Target:  5'- gGCCAAGGCGCAUGUCGCCGUCUUCGAu -3'
miRNA:   3'- -CGGUUCCGCGUACAGCGGCAGAAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.