miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7183 3' -55.3 NC_001900.1 + 42294 0.66 0.73046
Target:  5'- gCUCGau-CUGCagGAUCAgCUCGGCGa -3'
miRNA:   3'- gGAGCcauGACGa-CUGGUgGAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 42732 0.66 0.740928
Target:  5'- uCCUCGaUGucGUUGACCAUCUCG-CGg -3'
miRNA:   3'- -GGAGCcAUgaCGACUGGUGGAGCuGC- -5'
7183 3' -55.3 NC_001900.1 + 3004 0.66 0.708171
Target:  5'- cUCUCcGcacUGCUGCUGACCgaaggcgACCggCGACGg -3'
miRNA:   3'- -GGAGcC---AUGACGACUGG-------UGGa-GCUGC- -5'
7183 3' -55.3 NC_001900.1 + 17749 0.66 0.698514
Target:  5'- cCCUCGGcACUGCgcuuACCACUgcgcugcaGGCGa -3'
miRNA:   3'- -GGAGCCaUGACGac--UGGUGGag------CUGC- -5'
7183 3' -55.3 NC_001900.1 + 18669 0.66 0.698514
Target:  5'- gCCgugCGGcGCUGCaGGCgCAgCUCGACc -3'
miRNA:   3'- -GGa--GCCaUGACGaCUG-GUgGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 15255 0.66 0.698514
Target:  5'- --gUGGUcCUGCUGcACCAgUUCGAUGa -3'
miRNA:   3'- ggaGCCAuGACGAC-UGGUgGAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 46921 0.66 0.740928
Target:  5'- cCCUCGGg--UGCguuucGACCGcgagaaagcCCUCGAUGg -3'
miRNA:   3'- -GGAGCCaugACGa----CUGGU---------GGAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 20119 0.66 0.719893
Target:  5'- aCCUgGGUcgGC-GCUGAUgGCCgaCGACGu -3'
miRNA:   3'- -GGAgCCA--UGaCGACUGgUGGa-GCUGC- -5'
7183 3' -55.3 NC_001900.1 + 14303 0.67 0.655076
Target:  5'- aCggCGGUGC-GCUGACCgguCUCGAUGc -3'
miRNA:   3'- gGa-GCCAUGaCGACUGGug-GAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 6128 0.67 0.655076
Target:  5'- aCCaacGUGCUGCUGAgCCACUucccguacgUCGGCGa -3'
miRNA:   3'- -GGagcCAUGACGACU-GGUGG---------AGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 9417 0.67 0.644138
Target:  5'- aCC-CGGUGCUGU---UCGCgCUCGACGc -3'
miRNA:   3'- -GGaGCCAUGACGacuGGUG-GAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 48958 0.67 0.676879
Target:  5'- uCCUCGGU--UGCUGggcaucguguGCC-CCUCGAgGc -3'
miRNA:   3'- -GGAGCCAugACGAC----------UGGuGGAGCUgC- -5'
7183 3' -55.3 NC_001900.1 + 34567 0.67 0.665993
Target:  5'- gCCUUGGccagGCUccagaacgcaucGuCCACCUCGACGg -3'
miRNA:   3'- -GGAGCCaugaCGA------------CuGGUGGAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 5281 0.67 0.665993
Target:  5'- aCCgagCGGUagcACUGCUGcCgGCCgugcgUGACGg -3'
miRNA:   3'- -GGa--GCCA---UGACGACuGgUGGa----GCUGC- -5'
7183 3' -55.3 NC_001900.1 + 24045 0.68 0.5678
Target:  5'- aCCUCGGUGCcgagGC-GGCUAUCcCGGCa -3'
miRNA:   3'- -GGAGCCAUGa---CGaCUGGUGGaGCUGc -5'
7183 3' -55.3 NC_001900.1 + 30702 0.68 0.615673
Target:  5'- --cCGGUcacagcguucuucacGCUGCUGGCCAguuCCUUGGCc -3'
miRNA:   3'- ggaGCCA---------------UGACGACUGGU---GGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 10503 0.69 0.535689
Target:  5'- gCCUCGGc-CUGCUGGgCACgauggUCGACGc -3'
miRNA:   3'- -GGAGCCauGACGACUgGUGg----AGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 36687 0.69 0.546328
Target:  5'- aCCUCGcUGgaGCUGAuCCGCCgCGACc -3'
miRNA:   3'- -GGAGCcAUgaCGACU-GGUGGaGCUGc -5'
7183 3' -55.3 NC_001900.1 + 38996 0.69 0.546329
Target:  5'- gCgUUGGUGaaGUUGGCCAgCUCGGCu -3'
miRNA:   3'- -GgAGCCAUgaCGACUGGUgGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 30306 0.7 0.493928
Target:  5'- uCCUCGGUcGC-GUUGACCuuCUCGAUc -3'
miRNA:   3'- -GGAGCCA-UGaCGACUGGugGAGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.