miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7183 3' -55.3 NC_001900.1 + 32818 1.1 0.00084
Target:  5'- aCCUCGGUACUGCUGACCACCUCGACGc -3'
miRNA:   3'- -GGAGCCAUGACGACUGGUGGAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 23944 0.77 0.182068
Target:  5'- gUCUCGGUGCgGCUcGGuCCACCUCGAa- -3'
miRNA:   3'- -GGAGCCAUGaCGA-CU-GGUGGAGCUgc -5'
7183 3' -55.3 NC_001900.1 + 41847 0.76 0.225097
Target:  5'- cCCUCGGUGaucggacGCUGGCCAagCUCGAUGa -3'
miRNA:   3'- -GGAGCCAUga-----CGACUGGUg-GAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 33047 0.75 0.256171
Target:  5'- --cUGGUGCUGCUGGCCACCgcCGcCGc -3'
miRNA:   3'- ggaGCCAUGACGACUGGUGGa-GCuGC- -5'
7183 3' -55.3 NC_001900.1 + 19092 0.72 0.350734
Target:  5'- gCgUCGGUGCUuccucGCUGACCccggucacgucaugGCCUCGAuCGa -3'
miRNA:   3'- -GgAGCCAUGA-----CGACUGG--------------UGGAGCU-GC- -5'
7183 3' -55.3 NC_001900.1 + 42945 0.71 0.434292
Target:  5'- aCUCGGg---GUUGGCUGCCUCGAUc -3'
miRNA:   3'- gGAGCCaugaCGACUGGUGGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 43446 0.71 0.442974
Target:  5'- gUCUCGGaucACUGCuUGACCACCcccgcgucauggaUCGGCc -3'
miRNA:   3'- -GGAGCCa--UGACG-ACUGGUGG-------------AGCUGc -5'
7183 3' -55.3 NC_001900.1 + 30306 0.7 0.493928
Target:  5'- uCCUCGGUcGC-GUUGACCuuCUCGAUc -3'
miRNA:   3'- -GGAGCCA-UGaCGACUGGugGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 27063 0.7 0.493928
Target:  5'- gCCUgGGcGCUGCUGAUCcUCUCGuCGc -3'
miRNA:   3'- -GGAgCCaUGACGACUGGuGGAGCuGC- -5'
7183 3' -55.3 NC_001900.1 + 10503 0.69 0.535689
Target:  5'- gCCUCGGc-CUGCUGGgCACgauggUCGACGc -3'
miRNA:   3'- -GGAGCCauGACGACUgGUGg----AGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 36687 0.69 0.546328
Target:  5'- aCCUCGcUGgaGCUGAuCCGCCgCGACc -3'
miRNA:   3'- -GGAGCcAUgaCGACU-GGUGGaGCUGc -5'
7183 3' -55.3 NC_001900.1 + 38996 0.69 0.546329
Target:  5'- gCgUUGGUGaaGUUGGCCAgCUCGGCu -3'
miRNA:   3'- -GgAGCCAUgaCGACUGGUgGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 24045 0.68 0.5678
Target:  5'- aCCUCGGUGCcgagGC-GGCUAUCcCGGCa -3'
miRNA:   3'- -GGAGCCAUGa---CGaCUGGUGGaGCUGc -5'
7183 3' -55.3 NC_001900.1 + 30702 0.68 0.615673
Target:  5'- --cCGGUcacagcguucuucacGCUGCUGGCCAguuCCUUGGCc -3'
miRNA:   3'- ggaGCCA---------------UGACGACUGGU---GGAGCUGc -5'
7183 3' -55.3 NC_001900.1 + 9417 0.67 0.644138
Target:  5'- aCC-CGGUGCUGU---UCGCgCUCGACGc -3'
miRNA:   3'- -GGaGCCAUGACGacuGGUG-GAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 6128 0.67 0.655076
Target:  5'- aCCaacGUGCUGCUGAgCCACUucccguacgUCGGCGa -3'
miRNA:   3'- -GGagcCAUGACGACU-GGUGG---------AGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 14303 0.67 0.655076
Target:  5'- aCggCGGUGC-GCUGACCgguCUCGAUGc -3'
miRNA:   3'- gGa-GCCAUGaCGACUGGug-GAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 34567 0.67 0.665993
Target:  5'- gCCUUGGccagGCUccagaacgcaucGuCCACCUCGACGg -3'
miRNA:   3'- -GGAGCCaugaCGA------------CuGGUGGAGCUGC- -5'
7183 3' -55.3 NC_001900.1 + 5281 0.67 0.665993
Target:  5'- aCCgagCGGUagcACUGCUGcCgGCCgugcgUGACGg -3'
miRNA:   3'- -GGa--GCCA---UGACGACuGgUGGa----GCUGC- -5'
7183 3' -55.3 NC_001900.1 + 48958 0.67 0.676879
Target:  5'- uCCUCGGU--UGCUGggcaucguguGCC-CCUCGAgGc -3'
miRNA:   3'- -GGAGCCAugACGAC----------UGGuGGAGCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.