miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7184 3' -52.7 NC_001900.1 + 9190 0.66 0.824685
Target:  5'- aCGCGAUGuaccgccACGGcgUACCGAcCgCCGUg -3'
miRNA:   3'- -GCGCUACu------UGUCuaGUGGCUaG-GGCA- -5'
7184 3' -52.7 NC_001900.1 + 10968 0.66 0.851621
Target:  5'- gCGCGAagUGGgaugGCAGGUCGCCGAcagaUCaUCGg -3'
miRNA:   3'- -GCGCU--ACU----UGUCUAGUGGCU----AG-GGCa -5'
7184 3' -52.7 NC_001900.1 + 18188 0.66 0.851621
Target:  5'- aGCGGUGugcAGCAGGUCuCCGAcUUCGUc -3'
miRNA:   3'- gCGCUAC---UUGUCUAGuGGCUaGGGCA- -5'
7184 3' -52.7 NC_001900.1 + 42150 0.66 0.80566
Target:  5'- aGCGAcuccaggccgcUGAACGGGUCAuccCCGuccCCCGa -3'
miRNA:   3'- gCGCU-----------ACUUGUCUAGU---GGCua-GGGCa -5'
7184 3' -52.7 NC_001900.1 + 5617 0.66 0.80566
Target:  5'- uGCGcUGGGCAGG-CAUCGGUgCCGc -3'
miRNA:   3'- gCGCuACUUGUCUaGUGGCUAgGGCa -5'
7184 3' -52.7 NC_001900.1 + 33530 0.66 0.824685
Target:  5'- gGCGAgaggccGAACAGAuccUCGuuGAUCCaCGa -3'
miRNA:   3'- gCGCUa-----CUUGUCU---AGUggCUAGG-GCa -5'
7184 3' -52.7 NC_001900.1 + 15012 0.66 0.824685
Target:  5'- aGCcAUGAguuGCGGAUC-CCGGUgCCGg -3'
miRNA:   3'- gCGcUACU---UGUCUAGuGGCUAgGGCa -5'
7184 3' -52.7 NC_001900.1 + 26003 0.66 0.815273
Target:  5'- uCGCGGUGucccGCAGc-CACuCGAUCUCGUc -3'
miRNA:   3'- -GCGCUACu---UGUCuaGUG-GCUAGGGCA- -5'
7184 3' -52.7 NC_001900.1 + 24255 0.66 0.80566
Target:  5'- aGCGAUGAGCGugcCACCG--CCCGa -3'
miRNA:   3'- gCGCUACUUGUcuaGUGGCuaGGGCa -5'
7184 3' -52.7 NC_001900.1 + 39081 0.67 0.754994
Target:  5'- aCGCGucGAACAGcGUCuguCCGGUCUCGg -3'
miRNA:   3'- -GCGCuaCUUGUC-UAGu--GGCUAGGGCa -5'
7184 3' -52.7 NC_001900.1 + 42991 0.68 0.733732
Target:  5'- uGCGAUGAACucGGGggAgCGAUCCCu- -3'
miRNA:   3'- gCGCUACUUG--UCUagUgGCUAGGGca -5'
7184 3' -52.7 NC_001900.1 + 39940 0.68 0.743358
Target:  5'- gCGCGAacgaaccUGAGCccGGA-CACCGaAUCCCGc -3'
miRNA:   3'- -GCGCU-------ACUUG--UCUaGUGGC-UAGGGCa -5'
7184 3' -52.7 NC_001900.1 + 27139 0.68 0.722936
Target:  5'- uCGCGAUGGu--GAUCGCggCGAUUCCGc -3'
miRNA:   3'- -GCGCUACUuguCUAGUG--GCUAGGGCa -5'
7184 3' -52.7 NC_001900.1 + 19893 0.68 0.701075
Target:  5'- gCGCgGAUGAACGG-UguCCGGUUCCGc -3'
miRNA:   3'- -GCG-CUACUUGUCuAguGGCUAGGGCa -5'
7184 3' -52.7 NC_001900.1 + 36221 0.68 0.712046
Target:  5'- aCGuCGAaGGACAGAcCGCCGAUCUgGc -3'
miRNA:   3'- -GC-GCUaCUUGUCUaGUGGCUAGGgCa -5'
7184 3' -52.7 NC_001900.1 + 640 0.68 0.733732
Target:  5'- aCGCGAUaGGCGGAUCggaaacgaucgcGCCGgAUCCgGUg -3'
miRNA:   3'- -GCGCUAcUUGUCUAG------------UGGC-UAGGgCA- -5'
7184 3' -52.7 NC_001900.1 + 23671 0.68 0.733732
Target:  5'- gGCGAUGAAguacCAGAUgGCCucagcagCCCGUg -3'
miRNA:   3'- gCGCUACUU----GUCUAgUGGcua----GGGCA- -5'
7184 3' -52.7 NC_001900.1 + 12479 0.69 0.65661
Target:  5'- gGCGAUGcACGG--CACCGAcagCCCGUu -3'
miRNA:   3'- gCGCUACuUGUCuaGUGGCUa--GGGCA- -5'
7184 3' -52.7 NC_001900.1 + 27501 0.69 0.66779
Target:  5'- gGCGAUGuAGCGGcgCACCG-UCuuGg -3'
miRNA:   3'- gCGCUAC-UUGUCuaGUGGCuAGggCa -5'
7184 3' -52.7 NC_001900.1 + 29031 0.7 0.578282
Target:  5'- gGCGGUG--UAGA-CGCCGAUCUCGUc -3'
miRNA:   3'- gCGCUACuuGUCUaGUGGCUAGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.