miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7187 5' -52.8 NC_001900.1 + 42306 0.66 0.809609
Target:  5'- gGAUCag-CUCGGCG-ACACCCUUcucGACc -3'
miRNA:   3'- -CUGGcuaGAGUCGCuUGUGGGAA---CUG- -5'
7187 5' -52.8 NC_001900.1 + 8663 0.66 0.799769
Target:  5'- uGCaCGGgcUCUCGGUGAGCGCCaa-GGCg -3'
miRNA:   3'- cUG-GCU--AGAGUCGCUUGUGGgaaCUG- -5'
7187 5' -52.8 NC_001900.1 + 22934 0.66 0.799769
Target:  5'- --aCGGUCUgA-CGAGCGCCCUggGACc -3'
miRNA:   3'- cugGCUAGAgUcGCUUGUGGGAa-CUG- -5'
7187 5' -52.8 NC_001900.1 + 3038 0.66 0.789743
Target:  5'- cGCCGcgCUCGGCGGcuggGCAugaacCCCUggaaGACa -3'
miRNA:   3'- cUGGCuaGAGUCGCU----UGU-----GGGAa---CUG- -5'
7187 5' -52.8 NC_001900.1 + 29967 0.66 0.789743
Target:  5'- uGACCGGggUCAGCGAggaaGCACC---GACg -3'
miRNA:   3'- -CUGGCUagAGUCGCU----UGUGGgaaCUG- -5'
7187 5' -52.8 NC_001900.1 + 3037 0.67 0.769178
Target:  5'- cGACgGGUCcgccuggagaUCgAGCGGGCACCCgccGACc -3'
miRNA:   3'- -CUGgCUAG----------AG-UCGCUUGUGGGaa-CUG- -5'
7187 5' -52.8 NC_001900.1 + 3852 0.67 0.769178
Target:  5'- gGGCUGAUCggcgCGGUGAACACCgUcaacgucGACu -3'
miRNA:   3'- -CUGGCUAGa---GUCGCUUGUGGgAa------CUG- -5'
7187 5' -52.8 NC_001900.1 + 13527 0.67 0.769178
Target:  5'- aGGCUGAucugUCUCAGgGcaagcucguCAUCCUUGACg -3'
miRNA:   3'- -CUGGCU----AGAGUCgCuu-------GUGGGAACUG- -5'
7187 5' -52.8 NC_001900.1 + 29990 0.67 0.758665
Target:  5'- cACCGGUCgucaaguugaAGCGcuCACCgUUGACa -3'
miRNA:   3'- cUGGCUAGag--------UCGCuuGUGGgAACUG- -5'
7187 5' -52.8 NC_001900.1 + 43709 0.67 0.748014
Target:  5'- uGGCCGAUCUgGGCGAGcCACaUCgcGAUg -3'
miRNA:   3'- -CUGGCUAGAgUCGCUU-GUG-GGaaCUG- -5'
7187 5' -52.8 NC_001900.1 + 34648 0.67 0.726349
Target:  5'- uGGCCGAaCUCaagGGCGAACGCgUUgGGCg -3'
miRNA:   3'- -CUGGCUaGAG---UCGCUUGUGgGAaCUG- -5'
7187 5' -52.8 NC_001900.1 + 5441 0.68 0.704285
Target:  5'- aACCGAcCUCGGC-AACACCCcgGAg -3'
miRNA:   3'- cUGGCUaGAGUCGcUUGUGGGaaCUg -5'
7187 5' -52.8 NC_001900.1 + 31056 0.68 0.681921
Target:  5'- uGACCGGcaucagCUUGGUGAACGCCUg-GACg -3'
miRNA:   3'- -CUGGCUa-----GAGUCGCUUGUGGGaaCUG- -5'
7187 5' -52.8 NC_001900.1 + 39464 0.68 0.659355
Target:  5'- gGAUCGAUCUCGGCGuacauGCGCgUCgggGGCu -3'
miRNA:   3'- -CUGGCUAGAGUCGCu----UGUG-GGaa-CUG- -5'
7187 5' -52.8 NC_001900.1 + 46900 0.69 0.613989
Target:  5'- uGGCC-AUCUCGGCcacGAACGCCCUcGGg -3'
miRNA:   3'- -CUGGcUAGAGUCG---CUUGUGGGAaCUg -5'
7187 5' -52.8 NC_001900.1 + 21986 0.69 0.59927
Target:  5'- cGACCGAcaUCAGCGAcgagaggaucagcaGCGCCCa-GGCg -3'
miRNA:   3'- -CUGGCUagAGUCGCU--------------UGUGGGaaCUG- -5'
7187 5' -52.8 NC_001900.1 + 48772 0.7 0.591364
Target:  5'- gGGCCGGUuauuaCUCAG-GAGCGCCCgaaaGGCg -3'
miRNA:   3'- -CUGGCUA-----GAGUCgCUUGUGGGaa--CUG- -5'
7187 5' -52.8 NC_001900.1 + 46003 0.7 0.580102
Target:  5'- cGCCGGUCgggUCGGCGggUGCCCgcucGAUc -3'
miRNA:   3'- cUGGCUAG---AGUCGCuuGUGGGaa--CUG- -5'
7187 5' -52.8 NC_001900.1 + 42568 0.7 0.557723
Target:  5'- gGGCCGAgCUgGGgGAccGCGCCgUUGACa -3'
miRNA:   3'- -CUGGCUaGAgUCgCU--UGUGGgAACUG- -5'
7187 5' -52.8 NC_001900.1 + 3967 0.7 0.557723
Target:  5'- cGGCCGGUCUCA-CGGGCACCUc---- -3'
miRNA:   3'- -CUGGCUAGAGUcGCUUGUGGGaacug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.