miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7189 3' -52.9 NC_001900.1 + 20866 0.66 0.801625
Target:  5'- cGGGAUG-GCUGCGugGucuggGACa-UCGAg -3'
miRNA:   3'- aCCCUACuCGACGUugU-----CUGgaAGCU- -5'
7189 3' -52.9 NC_001900.1 + 4617 0.66 0.801625
Target:  5'- cGGGAucUGA-CUGUAAauCAGACgCUUCGGc -3'
miRNA:   3'- aCCCU--ACUcGACGUU--GUCUG-GAAGCU- -5'
7189 3' -52.9 NC_001900.1 + 195 0.67 0.739027
Target:  5'- gUGGGGUG-GCUGuCAaacGCAGAcuCCUUCc- -3'
miRNA:   3'- -ACCCUACuCGAC-GU---UGUCU--GGAAGcu -5'
7189 3' -52.9 NC_001900.1 + 20538 0.67 0.728116
Target:  5'- cUGGaGAUGcGCgUGCAGCAGcgaGCgUUCGAc -3'
miRNA:   3'- -ACC-CUACuCG-ACGUUGUC---UGgAAGCU- -5'
7189 3' -52.9 NC_001900.1 + 42702 0.67 0.717102
Target:  5'- gGGGAUGAcGUUGUugaagcucACAGACCcuccUCGAu -3'
miRNA:   3'- aCCCUACU-CGACGu-------UGUCUGGa---AGCU- -5'
7189 3' -52.9 NC_001900.1 + 16012 0.68 0.638183
Target:  5'- cGGGccGAGCUGUAcgcgaccguacuGCGGACCUg-GAu -3'
miRNA:   3'- aCCCuaCUCGACGU------------UGUCUGGAagCU- -5'
7189 3' -52.9 NC_001900.1 + 18194 0.69 0.592693
Target:  5'- cGGGAgGAGgUGCAugAGGCgcUCGAc -3'
miRNA:   3'- aCCCUaCUCgACGUugUCUGgaAGCU- -5'
7189 3' -52.9 NC_001900.1 + 24137 0.7 0.547766
Target:  5'- uUGGGGUGAGCUGCc-UAGcGCCgccgUCGu -3'
miRNA:   3'- -ACCCUACUCGACGuuGUC-UGGa---AGCu -5'
7189 3' -52.9 NC_001900.1 + 48645 0.75 0.291035
Target:  5'- aUGGGugcuGUGAGCUGCAcaaucGCGGGCUgUCGGg -3'
miRNA:   3'- -ACCC----UACUCGACGU-----UGUCUGGaAGCU- -5'
7189 3' -52.9 NC_001900.1 + 45742 0.81 0.123406
Target:  5'- gGGGGUGGGCUGCuuGguGACCgggUCGAg -3'
miRNA:   3'- aCCCUACUCGACGu-UguCUGGa--AGCU- -5'
7189 3' -52.9 NC_001900.1 + 28226 1.09 0.001305
Target:  5'- gUGGGAUGAGCUGCAACAGACCUUCGAc -3'
miRNA:   3'- -ACCCUACUCGACGUUGUCUGGAAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.