miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7189 5' -54.7 NC_001900.1 + 3066 0.69 0.539755
Target:  5'- aCCCGCcGACCCgaccggcgggaAGGUCGUUGAc -3'
miRNA:   3'- gGGGUGuCUGGGaag--------UCCAGUAGCUu -5'
7189 5' -54.7 NC_001900.1 + 5065 0.67 0.643901
Target:  5'- uCCCCGguGGCCCggugaAGGUCucgcaacgaggcGUCGAc -3'
miRNA:   3'- -GGGGUguCUGGGaag--UCCAG------------UAGCUu -5'
7189 5' -54.7 NC_001900.1 + 9932 0.7 0.439908
Target:  5'- gCCCC-CGG-CCgUcCAGGUCAUCGGGg -3'
miRNA:   3'- -GGGGuGUCuGGgAaGUCCAGUAGCUU- -5'
7189 5' -54.7 NC_001900.1 + 23954 0.66 0.688388
Target:  5'- aCCCACGGACCa-UCGGGUgucUGUUGGc -3'
miRNA:   3'- gGGGUGUCUGGgaAGUCCA---GUAGCUu -5'
7189 5' -54.7 NC_001900.1 + 25492 0.68 0.577031
Target:  5'- cUCCCACGG-CCCgg-AGGUCGUgGAu -3'
miRNA:   3'- -GGGGUGUCuGGGaagUCCAGUAgCUu -5'
7189 5' -54.7 NC_001900.1 + 28263 1.08 0.001213
Target:  5'- gCCCCACAGACCCUUCAGGUCAUCGAAc -3'
miRNA:   3'- -GGGGUGUCUGGGAAGUCCAGUAGCUU- -5'
7189 5' -54.7 NC_001900.1 + 33605 0.66 0.688388
Target:  5'- aCCgGCAGugCggcaAGGUCAUCGAu -3'
miRNA:   3'- gGGgUGUCugGgaagUCCAGUAGCUu -5'
7189 5' -54.7 NC_001900.1 + 37589 0.66 0.688388
Target:  5'- cCCCCACAGGCgCUcguuguagUCGGGguaCcgCGAc -3'
miRNA:   3'- -GGGGUGUCUGgGA--------AGUCCa--GuaGCUu -5'
7189 5' -54.7 NC_001900.1 + 38537 0.66 0.721207
Target:  5'- -gCCugGGACCg-UCGGGUCggcGUCGAc -3'
miRNA:   3'- ggGGugUCUGGgaAGUCCAG---UAGCUu -5'
7189 5' -54.7 NC_001900.1 + 39576 0.67 0.632725
Target:  5'- uCCCCAUcGcucCCCUUCGGGUUGUCc-- -3'
miRNA:   3'- -GGGGUGuCu--GGGAAGUCCAGUAGcuu -5'
7189 5' -54.7 NC_001900.1 + 42720 0.69 0.544102
Target:  5'- gCUCACAGACCCUccUCGauGUCGUUGAc -3'
miRNA:   3'- gGGGUGUCUGGGA--AGUc-CAGUAGCUu -5'
7189 5' -54.7 NC_001900.1 + 45568 0.69 0.533257
Target:  5'- aCCgGcCAGACCCUgCGGGUUcUCGGAc -3'
miRNA:   3'- gGGgU-GUCUGGGAaGUCCAGuAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.