Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7191 | 3' | -61.9 | NC_001900.1 | + | 27801 | 1.07 | 0.000262 |
Target: 5'- cGAUCGCGCCACCGACCGCGCCGAGCAc -3' miRNA: 3'- -CUAGCGCGGUGGCUGGCGCGGCUCGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 39288 | 0.76 | 0.068759 |
Target: 5'- --gCGgGaCCACCggGACCGCGCCGAGCc -3' miRNA: 3'- cuaGCgC-GGUGG--CUGGCGCGGCUCGu -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 16895 | 0.75 | 0.079014 |
Target: 5'- gGAUCGuCGCCAUCG-CCGCGCCGcuugucGGCu -3' miRNA: 3'- -CUAGC-GCGGUGGCuGGCGCGGC------UCGu -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 19157 | 0.73 | 0.109902 |
Target: 5'- -uUCGCGUC-CUGGCCGCGCucuCGGGCGa -3' miRNA: 3'- cuAGCGCGGuGGCUGGCGCG---GCUCGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 2449 | 0.73 | 0.119237 |
Target: 5'- aGGUCGacgGCC-CCGGCUGCGuCCGGGCu -3' miRNA: 3'- -CUAGCg--CGGuGGCUGGCGC-GGCUCGu -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 23317 | 0.73 | 0.119237 |
Target: 5'- cGGUCG-GCC-CCGGCUGgGCCGAGUu -3' miRNA: 3'- -CUAGCgCGGuGGCUGGCgCGGCUCGu -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 26036 | 0.71 | 0.164386 |
Target: 5'- --gCGUGCCGCCGugC-CGUCGGGUAc -3' miRNA: 3'- cuaGCGCGGUGGCugGcGCGGCUCGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 3175 | 0.7 | 0.18739 |
Target: 5'- cGGUUGcCGCUACCGACUGCucccccGCCGGGgGu -3' miRNA: 3'- -CUAGC-GCGGUGGCUGGCG------CGGCUCgU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 43054 | 0.69 | 0.213181 |
Target: 5'- -cUCGCggagGUCACCGGCuCGCGCCGAu-- -3' miRNA: 3'- cuAGCG----CGGUGGCUG-GCGCGGCUcgu -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 25327 | 0.69 | 0.213181 |
Target: 5'- -cUCGaUGCCGUCGACCGUGCC-AGCGa -3' miRNA: 3'- cuAGC-GCGGUGGCUGGCGCGGcUCGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 15094 | 0.69 | 0.223188 |
Target: 5'- cGUCGaccuggacuggaGCCACCGGCUG-GUCGAGCGu -3' miRNA: 3'- cUAGCg-----------CGGUGGCUGGCgCGGCUCGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 41111 | 0.68 | 0.241963 |
Target: 5'- --aUGCgGCCACCGGCCGCG--GAGUAg -3' miRNA: 3'- cuaGCG-CGGUGGCUGGCGCggCUCGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 47453 | 0.68 | 0.248095 |
Target: 5'- --gUGuCGCCACCGGCCGagaaGCCGAccucgaacaGCGa -3' miRNA: 3'- cuaGC-GCGGUGGCUGGCg---CGGCU---------CGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 37918 | 0.68 | 0.248095 |
Target: 5'- uGUUGCGUCACCGuggaugagGCGCUGAGCu -3' miRNA: 3'- cUAGCGCGGUGGCugg-----CGCGGCUCGu -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 21275 | 0.68 | 0.260743 |
Target: 5'- cGGUgGCGCgAUCGACCugccccCGCUGGGCGg -3' miRNA: 3'- -CUAgCGCGgUGGCUGGc-----GCGGCUCGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 40304 | 0.68 | 0.260743 |
Target: 5'- cGGUCGgcagugaGCCGCUgcggccgugguuGGCCGCGUCGAGUg -3' miRNA: 3'- -CUAGCg------CGGUGG------------CUGGCGCGGCUCGu -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 38626 | 0.68 | 0.280693 |
Target: 5'- gGAUCGCuGCaACCGACCaguuaCGCCaGGGCGa -3' miRNA: 3'- -CUAGCG-CGgUGGCUGGc----GCGG-CUCGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 25448 | 0.67 | 0.298947 |
Target: 5'- -uUCGCGCCACCGAccucgacauagaccCCGUcggugauGCCGAccGUAg -3' miRNA: 3'- cuAGCGCGGUGGCU--------------GGCG-------CGGCU--CGU- -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 17558 | 0.67 | 0.309152 |
Target: 5'- cAUCGCGCUgaugcccgcGCUGACUucgGUGUCGAGCu -3' miRNA: 3'- cUAGCGCGG---------UGGCUGG---CGCGGCUCGu -5' |
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7191 | 3' | -61.9 | NC_001900.1 | + | 11339 | 0.67 | 0.316602 |
Target: 5'- ---gGUuaCGCCGGuuGCGUCGAGCGg -3' miRNA: 3'- cuagCGcgGUGGCUggCGCGGCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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