miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7192 3' -56.8 NC_001900.1 + 7316 0.66 0.625553
Target:  5'- --cUGGGCUUGGUCGGGUGuaccuccgacGCCGAcGUg -3'
miRNA:   3'- ugaAUCCGAGCUGGCCCAU----------CGGCU-CG- -5'
7192 3' -56.8 NC_001900.1 + 10650 0.75 0.192907
Target:  5'- cACUgcgGGGCUCG-CCGGGUAcGUCcAGCg -3'
miRNA:   3'- -UGAa--UCCGAGCuGGCCCAU-CGGcUCG- -5'
7192 3' -56.8 NC_001900.1 + 19318 0.67 0.507053
Target:  5'- uACggcGGUggGGCCaacacGGUGGCCGAGCa -3'
miRNA:   3'- -UGaauCCGagCUGGc----CCAUCGGCUCG- -5'
7192 3' -56.8 NC_001900.1 + 20649 0.67 0.560105
Target:  5'- cACggAGGCcaaauccCGcuACUGGGUGGUCGAGUu -3'
miRNA:   3'- -UGaaUCCGa------GC--UGGCCCAUCGGCUCG- -5'
7192 3' -56.8 NC_001900.1 + 23679 0.66 0.624455
Target:  5'- cACUUcgucGGCUCGGCguucaacugcuccUGGGgAGCCGGGa -3'
miRNA:   3'- -UGAAu---CCGAGCUG-------------GCCCaUCGGCUCg -5'
7192 3' -56.8 NC_001900.1 + 25162 0.77 0.127993
Target:  5'- cGCagAGGCUCgGGCCGGGUacgAGgCGAGCc -3'
miRNA:   3'- -UGaaUCCGAG-CUGGCCCA---UCgGCUCG- -5'
7192 3' -56.8 NC_001900.1 + 27425 0.95 0.006123
Target:  5'- aACUgauGCUCGACCGGGUAGCCGAGCa -3'
miRNA:   3'- -UGAaucCGAGCUGGCCCAUCGGCUCG- -5'
7192 3' -56.8 NC_001900.1 + 31601 0.67 0.560105
Target:  5'- aGCUUcuggcGGUUCGGCCGGuucgGGCCGAc- -3'
miRNA:   3'- -UGAAu----CCGAGCUGGCCca--UCGGCUcg -5'
7192 3' -56.8 NC_001900.1 + 33926 0.71 0.32172
Target:  5'- aACUcGGGagcgugcCUCGGCUGGuGUGGCCGAcGCu -3'
miRNA:   3'- -UGAaUCC-------GAGCUGGCC-CAUCGGCU-CG- -5'
7192 3' -56.8 NC_001900.1 + 40275 0.66 0.569833
Target:  5'- cACgcGGGUcauguccUCGACCGuGUGGCCGgucGGCa -3'
miRNA:   3'- -UGaaUCCG-------AGCUGGCcCAUCGGC---UCG- -5'
7192 3' -56.8 NC_001900.1 + 42077 0.66 0.572001
Target:  5'- ---gGGGCagCGACCGGGUGGauccacucgucagagUGGGCa -3'
miRNA:   3'- ugaaUCCGa-GCUGGCCCAUCg--------------GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.