Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7192 | 5' | -54.7 | NC_001900.1 | + | 14795 | 0.71 | 0.427342 |
Target: 5'- uGACGCGGUUcCUGAUCCgggcgacguucucAGCGGUcGCu -3' miRNA: 3'- gCUGCGCUAGaGGCUAGG-------------UCGUCA-CG- -5' |
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7192 | 5' | -54.7 | NC_001900.1 | + | 14234 | 0.66 | 0.704211 |
Target: 5'- aGAUGCugaccgaGGUCUCCGAgaUCCugAGcCGGUGUg -3' miRNA: 3'- gCUGCG-------CUAGAGGCU--AGG--UC-GUCACG- -5' |
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7192 | 5' | -54.7 | NC_001900.1 | + | 10587 | 0.67 | 0.661538 |
Target: 5'- uCGACGCGAUUaCCGc-UgAGCuGUGCg -3' miRNA: 3'- -GCUGCGCUAGaGGCuaGgUCGuCACG- -5' |
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7192 | 5' | -54.7 | NC_001900.1 | + | 10405 | 0.68 | 0.606292 |
Target: 5'- gGGCGUGAUC-CCGcgUgAGCGG-GCu -3' miRNA: 3'- gCUGCGCUAGaGGCuaGgUCGUCaCG- -5' |
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7192 | 5' | -54.7 | NC_001900.1 | + | 10230 | 0.66 | 0.726784 |
Target: 5'- aGaACGCGAUCUUCG-----GCGGUGCg -3' miRNA: 3'- gC-UGCGCUAGAGGCuagguCGUCACG- -5' |
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7192 | 5' | -54.7 | NC_001900.1 | + | 3794 | 0.76 | 0.231797 |
Target: 5'- aCGACGCGcgugcguUCUCCGuagCCAGCGGaGCc -3' miRNA: 3'- -GCUGCGCu------AGAGGCua-GGUCGUCaCG- -5' |
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7192 | 5' | -54.7 | NC_001900.1 | + | 3538 | 0.71 | 0.418756 |
Target: 5'- uCGACGCGGcgCUCgGggCCGGUaacggccuGGUGCa -3' miRNA: 3'- -GCUGCGCUa-GAGgCuaGGUCG--------UCACG- -5' |
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7192 | 5' | -54.7 | NC_001900.1 | + | 2016 | 0.72 | 0.40934 |
Target: 5'- gGGCGCGuGUCaUCCGAgacUUCAGCGacGUGCa -3' miRNA: 3'- gCUGCGC-UAG-AGGCU---AGGUCGU--CACG- -5' |
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7192 | 5' | -54.7 | NC_001900.1 | + | 1064 | 0.71 | 0.437002 |
Target: 5'- cCGACGCaugggcggaagagGAUCcgCCGGUagCGGCGGUGCc -3' miRNA: 3'- -GCUGCG-------------CUAGa-GGCUAg-GUCGUCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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