miRNA display CGI

Results 21 - 29 of 29 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
7192	5'	-54.7	NC_001900.1	+	45972	0.69	0.572242
	Target:  5'- uCGACGuUGAUCacUUCGAUCCcuucggcuuggcaGGCGGUGUc -3' miRNA:   3'- -GCUGC-GCUAG--AGGCUAGG-------------UCGUCACG- -5'
7192	5'	-54.7	NC_001900.1	+	24500	0.69	0.562434
	Target:  5'- uCGACcCGGUgcugaCUCCGGUCaCGGCGGUcgGCg -3' miRNA:   3'- -GCUGcGCUA-----GAGGCUAG-GUCGUCA--CG- -5'
7192	5'	-54.7	NC_001900.1	+	15439	0.69	0.562434
	Target:  5'- aCGACGCGAUCgagcugCCGAUCgAugaccuugccGCAcUGCc -3' miRNA:   3'- -GCUGCGCUAGa-----GGCUAGgU----------CGUcACG- -5'
7192	5'	-54.7	NC_001900.1	+	24572	0.69	0.551591
	Target:  5'- uCGACGUGAuUCUCCucgGAgCUGGCGGUGg -3' miRNA:   3'- -GCUGCGCU-AGAGG---CUaGGUCGUCACg -5'
7192	5'	-54.7	NC_001900.1	+	19847	0.69	0.54943
	Target:  5'- cCGACGCGAggagcagaucagCUCCGAgUCgGGCuccccGGUGUg -3' miRNA:   3'- -GCUGCGCUa-----------GAGGCU-AGgUCG-----UCACG- -5'
7192	5'	-54.7	NC_001900.1	+	1064	0.71	0.437002
	Target:  5'- cCGACGCaugggcggaagagGAUCcgCCGGUagCGGCGGUGCc -3' miRNA:   3'- -GCUGCG-------------CUAGa-GGCUAg-GUCGUCACG- -5'
7192	5'	-54.7	NC_001900.1	+	3538	0.71	0.418756
	Target:  5'- uCGACGCGGcgCUCgGggCCGGUaacggccuGGUGCa -3' miRNA:   3'- -GCUGCGCUa-GAGgCuaGGUCG--------UCACG- -5'
7192	5'	-54.7	NC_001900.1	+	18153	0.75	0.266687
	Target:  5'- uCGGCGCaGUCgccgagugggucggcUCCuGGUCCAGCGGUGUg -3' miRNA:   3'- -GCUGCGcUAG---------------AGG-CUAGGUCGUCACG- -5'
7192	5'	-54.7	NC_001900.1	+	48417	0.78	0.172585
	Target:  5'- cCGGCGCGAUCguuUCCGAUCCGccuaucGCGucGUGCu -3' miRNA:   3'- -GCUGCGCUAG---AGGCUAGGU------CGU--CACG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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